View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_29 (Length: 262)
Name: NF12779_low_29
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 33334821 - 33335030
Alignment:
| Q |
38 |
actaaaccatttacatacttccaaataaaccagcaggttact---atagtataaacaaaggaagtgacatgcatagttaacaagttaatgaattcaacta |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33334821 |
actaaaccatttacatacttccaaataaaccagcaggttactactatagtataaacaaaggaagtgacatgcatagttaacaagttaatgaattcaacta |
33334920 |
T |
|
| Q |
135 |
aggaatacaaggtggaagaagaaaagagttgagcatcccaatatagagtaggaattagggcaatccctggataaatgagcaagattctcataagcagcag |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33334921 |
aggaatacaaggtggaagaagaaaagagttgagcatcccaatatagagtaggaattagggcaatccctggataaatgagcaagattctcataagcagcag |
33335020 |
T |
|
| Q |
235 |
tacacctttt |
244 |
Q |
| |
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|||||||||| |
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|
| T |
33335021 |
tacacctttt |
33335030 |
T |
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