View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_3 (Length: 508)
Name: NF12779_low_3
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 15 - 488
Target Start/End: Original strand, 27108353 - 27108829
Alignment:
| Q |
15 |
gagaagaatataaacaacgcggtttatagatagattaagacaaatgacattggagctaacgttgaaggacggagaaacttaattttgtttataaaagggt |
114 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27108353 |
gagaagaatgtaaacaacgcggtttatagatagattaagacaaatgacattggagctaacgttggaggacggagaaacttaattttgtttataaaagggt |
27108452 |
T |
|
| Q |
115 |
ttcttttggtcacaagaaagtaacaagaaacttaattagtggaaaaatatctttgaagaaaacatggtgtccaaagctgtgatcaactcaatgcttgtgc |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27108453 |
ttcttttggtcacaagaaagtaacaagaaacttaattagtggaaaaatatctttgaagaaaacatggtgtccaaagctgtgatcaactcaatgcttgtgc |
27108552 |
T |
|
| Q |
215 |
ttaggataatcacacttgcagcctcagtaacaaccgtggccttacttgttactaacactgccaaatttgatgatgattcaaatatgaaatttcaagacct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27108553 |
ttaggataatcacacttgcagcctcagtaacaaccgtggccttacttgttactaacactgccaaatttgatgatgatacaaatatgaaatttcaagacct |
27108652 |
T |
|
| Q |
315 |
catttcatacaggtaaaaaaccattcaagctaaaatgttaaattttgcttataatagtgatcagaatgtgtatatttaagtaat---attacattgaata |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27108653 |
catttcatacaggtaaaaaaccattcaagctaaaatgttaaattttgcttataatagtgatcagaatgtgtatatttaagtaatataattacattgaata |
27108752 |
T |
|
| Q |
412 |
ctattcaaagatttttctagctaattaataagagtactatgtttatgaaattatgtcaaaattgcaggtttgtagtc |
488 |
Q |
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| T |
27108753 |
ctattcaaagatttttctagctaataaataagagtactatgtttatgaaattatgtcaaaattgcaggtttgtagtc |
27108829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 15 - 488
Target Start/End: Original strand, 27150150 - 27150626
Alignment:
| Q |
15 |
gagaagaatataaacaacgcggtttatagatagattaagacaaatgacattggagctaacgttgaaggacggagaaacttaattttgtttataaaagggt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
27150150 |
gagaagaatgtaaacaacgcggtttatagatagattaagacaaatgacattggagctaacgttggaggacggagaaacttaattttgtttataaaagggt |
27150249 |
T |
|
| Q |
115 |
ttcttttggtcacaagaaagtaacaagaaacttaattagtggaaaaatatctttgaagaaaacatggtgtccaaagctgtgatcaactcaatgcttgtgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27150250 |
ttcttttggtcacaagaaagtaacaagaaacttaattagtggaaaaatatctttgaagaaaacatggtgtccaaagctgtgatcaactcaatgcttgtgc |
27150349 |
T |
|
| Q |
215 |
ttaggataatcacacttgcagcctcagtaacaaccgtggccttacttgttactaacactgccaaatttgatgatgattcaaatatgaaatttcaagacct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27150350 |
ttaggataatcacacttgcagcctcagtaacaaccgtggccttacttgttactaacactgccaaatttgatgatgatacaaatatgaaatttcaagacct |
27150449 |
T |
|
| Q |
315 |
catttcatacaggtaaaaaaccattcaagctaaaatgttaaattttgcttataatagtgatcagaatgtgtatatttaagtaat---attacattgaata |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27150450 |
catttcatacaggtaaaaaaccattcaagctaaaatgttaaattttgcttataatagtgatcagaatgtgtatatttaagtaatataattacattgaata |
27150549 |
T |
|
| Q |
412 |
ctattcaaagatttttctagctaattaataagagtactatgtttatgaaattatgtcaaaattgcaggtttgtagtc |
488 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27150550 |
ctattcaaagatttttctagctaataaataagagtactatgtttatgaaattatgtcaaaattgcaggtttgtagtc |
27150626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 35162099 - 35162135
Alignment:
| Q |
353 |
taaattttgcttataatagtgatcagaatgtgtatat |
389 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||| |
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| T |
35162099 |
taaattttgtttataatagtgatcagaaggtgtatat |
35162135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 376
Target Start/End: Complemental strand, 28229028 - 28228993
Alignment:
| Q |
341 |
aagctaaaatgttaaattttgcttataatagtgatc |
376 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |
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| T |
28229028 |
aagctaaaatgttaaattttgcttataatagtgatc |
28228993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 28321601 - 28321565
Alignment:
| Q |
344 |
ctaaaatgttaaattttgcttataatagtgatcagaa |
380 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| |
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|
| T |
28321601 |
ctaaaatgttaatttttgcttacaatagtgatcagaa |
28321565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 48440034 - 48440070
Alignment:
| Q |
344 |
ctaaaatgttaaattttgcttataatagtgatcagaa |
380 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||| |
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| T |
48440034 |
ctaaaatattaatttttgcttataatagtgatcagaa |
48440070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 36058808 - 36058774
Alignment:
| Q |
344 |
ctaaaatgttaaattttgcttataatagtgatcag |
378 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
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| T |
36058808 |
ctaaaatgttaaattttgtttataatagtgatcag |
36058774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 39911168 - 39911127
Alignment:
| Q |
344 |
ctaaaatgttaaattttgcttataatagtgatcagaatgtgt |
385 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| ||||| |
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|
| T |
39911168 |
ctaaaatgttgatttttgcttataatagtgatcagattgtgt |
39911127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 29486535 - 29486503
Alignment:
| Q |
344 |
ctaaaatgttaaattttgcttataatagtgatc |
376 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
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|
| T |
29486535 |
ctaaaatgtgaaattttgcttataatagtgatc |
29486503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 374
Target Start/End: Original strand, 33036969 - 33036997
Alignment:
| Q |
346 |
aaaatgttaaattttgcttataatagtga |
374 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
33036969 |
aaaatgttaaattttgcttataatagtga |
33036997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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