View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_30 (Length: 260)
Name: NF12779_low_30
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 10601025 - 10601246
Alignment:
| Q |
16 |
cactgaagtcacgttcaaatataagagttgcaattccaccttcaaagatacccaaaaagcaaatccaagctgtcattgagagttctgctgggtacatctt |
115 |
Q |
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| T |
10601025 |
cactgaagtcacgttcaaatataagagttgcaattccaccttcaaagatacccaaaaagcaaatccaagctgtcattgagagctctgctgggtacatctt |
10601124 |
T |
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| Q |
116 |
tagagtaaaagactgaaattcacaaggtatatatattattagttcatgcacattttccattgatttaattagacttagtttcttgtacttaattaaaatc |
215 |
Q |
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| T |
10601125 |
tagggtaaaagactgaaattcacaagg----tatattattagttcatgcacattttccattgatttaattagacctagtttcttgcacttaataaaaatc |
10601220 |
T |
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| Q |
216 |
ataactagaaaaataaaattagtaac |
241 |
Q |
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||||||| |||||||||||||||||| |
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| T |
10601221 |
ataactaaaaaaataaaattagtaac |
10601246 |
T |
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