View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_31 (Length: 252)
Name: NF12779_low_31
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 44154275 - 44154132
Alignment:
| Q |
95 |
ttgagagagatattagagtcatgtgccttatattatgctatgggtgggtgaggtgtgcgagtgtaaatggtaag-ccatgttgaccataccaaacatgac |
193 |
Q |
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| T |
44154275 |
ttgagagagatattagagtcatgtgccttatattatgttatgggtgggtgaggtgtgcgagtgtaaatggtaagcccatgttgaccataccaaacatgac |
44154176 |
T |
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| Q |
194 |
acgtagtatatgttaaataccggcttcgattcttccacgtgtgt |
237 |
Q |
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| T |
44154175 |
acgtagtatatgttaaataccggcttcgattcttccacgtgtgt |
44154132 |
T |
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 44155119 - 44155031
Alignment:
| Q |
17 |
acattgtatatatataactcaatgtggttacggtgcagttttaataatttcaacgttcaaagttgtgt--atattagactttgagagag |
103 |
Q |
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| T |
44155119 |
acattgtatatatataactcaatgtggttacggtgcagttttaataatttcaacgttgaaagttgtgtatatattaggctttgagagag |
44155031 |
T |
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