View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_39 (Length: 246)
Name: NF12779_low_39
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_39 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 33750434 - 33750668
Alignment:
| Q |
12 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcgga |
111 |
Q |
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| T |
33750434 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcgga |
33750533 |
T |
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| Q |
112 |
ggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagcagtcagaa |
211 |
Q |
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| T |
33750534 |
ggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagcagtcagaa |
33750633 |
T |
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| Q |
212 |
gtggttgctcctgatttagagaatgtaaaagatga |
246 |
Q |
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| T |
33750634 |
gtggttgctcctgatttagagaatgtaaaagatga |
33750668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 33718963 - 33719153
Alignment:
| Q |
14 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcggagg |
113 |
Q |
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| T |
33718963 |
agaggagtgagacagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaacctttaccacggcggagg |
33719062 |
T |
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| Q |
114 |
aagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagca |
204 |
Q |
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| T |
33719063 |
aagctgccagagcttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagca |
33719153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 33735634 - 33735824
Alignment:
| Q |
12 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcgga |
111 |
Q |
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||||||||||||| || || |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| ||| |||||||||| |
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| T |
33735634 |
acagaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcgga |
33735733 |
T |
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| Q |
112 |
ggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaag |
202 |
Q |
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| T |
33735734 |
ggaagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaag |
33735824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 33720980 - 33721171
Alignment:
| Q |
12 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcgga |
111 |
Q |
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| T |
33720980 |
acagaggagtgaggcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcgga |
33721079 |
T |
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| Q |
112 |
ggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagc |
203 |
Q |
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| T |
33721080 |
ggaagctgctagagcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatctcttaagc |
33721171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 6583050 - 6583102
Alignment:
| Q |
14 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgaccc |
66 |
Q |
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| T |
6583050 |
agaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgaccc |
6583102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 6568891 - 6568943
Alignment:
| Q |
14 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgaccc |
66 |
Q |
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| T |
6568891 |
agaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgaccc |
6568943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 13409876 - 13409921
Alignment:
| Q |
12 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaat |
57 |
Q |
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| T |
13409876 |
acagaggagtgagacaaagaccatggggaaaatgggcagcagaaat |
13409921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 44331914 - 44331866
Alignment:
| Q |
12 |
acagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcg |
60 |
Q |
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| T |
44331914 |
acagaggagtaagacagagaccatggggaaaatgggcagcagaaattcg |
44331866 |
T |
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