View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_40 (Length: 245)
Name: NF12779_low_40
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40570366 - 40570606
Alignment:
| Q |
1 |
ctccccatactagcaaagcacttgctaacaccttgtatgaatgtttgttggattggaatctagatagaaatgtctccacattgacacttgataattgctc |
100 |
Q |
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|||| ||||||||||||| || ||| | |||||| | | |||||| |||||||||||||||||| ||| | ||||||||||| |||||||||| || |
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| T |
40570366 |
ctcctcatactagcaaagttctagctgataccttggttcagtgtttgatggattggaatctagatacaaagttgtccacattgactgttgataattgttc |
40570465 |
T |
|
| Q |
101 |
tacgaatgatgctttgattgaacgcattttgaataagattacacctaagtcacttatattgggt-ggtaaattgttccacatgcgttgctcagctcacat |
199 |
Q |
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| T |
40570466 |
taccaatgatgctatgattgaccgcattttgaaaaagatttcacctaggttatttgtattgggtgggtcaattgtttcacatgcgctgttcggcgcatat |
40570565 |
T |
|
| Q |
200 |
agtgaatttaattgtgaaagagggcttgtccataatctctg |
240 |
Q |
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| T |
40570566 |
attgaatttaattgtgaaggatggcttgtccataatctctg |
40570606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16752952 - 16752875
Alignment:
| Q |
1 |
ctccccatactagcaaagcacttgctaacaccttgtatgaatgtttgttggattggaatctagatagaaatgtctcca |
78 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16752952 |
ctccccatactagcaaagcacttgctgacaccttgtatgaatgtttgttggattggaatctagatagaaatgtctcca |
16752875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42624052 - 42624287
Alignment:
| Q |
1 |
ctccccatactagcaaagcacttgctaacaccttgtatgaatgtttgttggattggaatctagatagaaatgtctccacattgacacttgataattgctc |
100 |
Q |
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|||| ||||||||||||| || ||| | |||||| | | |||||| |||||||||||||||||| ||| | | ||||||||| |||||||||| || |
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| T |
42624052 |
ctcctcatactagcaaagttctagctgataccttggttcagtgtttgatggattggaatctagatataaagttgttcacattgactgttgataattgttc |
42624151 |
T |
|
| Q |
101 |
tacgaatgatgctttgattgaacgcattttgaataagattacacctaagtcacttatattgggtggtaaattgttccacatgcgttgctcagctcacata |
200 |
Q |
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||| ||||||| | ||||||| ||||||||||| | | |||||| || | || ||||||||||| ||||||| |||||||| || || | || ||| |
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| T |
42624152 |
taccaatgatgttatgattgaccgcattttgaa----agttcacctaggttatttgtattgggtggtcaattgtttcacatgcgctgttcgacgcatata |
42624247 |
T |
|
| Q |
201 |
gtgaatttaattgtgaaagagggcttgtccataatctctg |
240 |
Q |
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|||||||||||||||| || ||||||||||||||||||| |
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| T |
42624248 |
ttgaatttaattgtgaaggatggcttgtccataatctctg |
42624287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Complemental strand, 43955444 - 43955414
Alignment:
| Q |
201 |
gtgaatttaattgtgaaagagggcttgtcca |
231 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
43955444 |
gtgaatttaattgtgaaagagggcttgtcca |
43955414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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