View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_42 (Length: 243)
Name: NF12779_low_42
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_42 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 45082710 - 45082472
Alignment:
| Q |
1 |
ggtaacagaacgccaagattaaatgaacatgggagaaaacgcagaatgtttaaatgaaacgtgaaaaaagatttgattatacagaggaaagaaaagaacc |
100 |
Q |
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| T |
45082710 |
ggtaacagaacgccaagattaaatgaacatgggagaaaacgcagaatgtttaaatgaaacatgaaaaaagatttgatcatacagaggaaagaaaagaacc |
45082611 |
T |
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| Q |
101 |
tgttgacgaaacatgggagagtcgttgagatgtgcgaaattcattaacagaaaataaaacaatgcttaatattcttcttgtgtttgtttgttgttgtcac |
200 |
Q |
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| T |
45082610 |
tgttgacgaaacatgggagagtcgttgagatgtgcgaaattcattaacagagaataaaacaatgcttaatattcttcttgtgtt----tgttgttgtcac |
45082515 |
T |
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| Q |
201 |
gttgttcctcttttgctgattattctaaggtgacagaaaacta |
243 |
Q |
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| T |
45082514 |
gttgttcctcttttgctgattattctaaggtgacaaaaaacta |
45082472 |
T |
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