View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_43 (Length: 243)
Name: NF12779_low_43
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 38933208 - 38933027
Alignment:
| Q |
1 |
agcagagaaagtgctagaaatcagaccctacaaaaagttatacggcaaatggacaatttttccagtaatggatgtatagatattagatagaggggtctaa |
100 |
Q |
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| T |
38933208 |
agcagagaaagtgttagaaatcagaccctacaaaaagttctacggcaaatggacaatttttccagtaatggat-----------agatagaggggtctaa |
38933120 |
T |
|
| Q |
101 |
aactacagttccttctttcttagtcggccattcataaatactaggtgggtccaaaccataacaaaacaaaatatatgacataacacaaacaca |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38933119 |
aactacagttccttctttcttagtcggccattcataaatactaggtgggtccaaaccataacaaaacaaaatatatgacataacacaaacaca |
38933027 |
T |
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