View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_45 (Length: 240)
Name: NF12779_low_45
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 43489917 - 43489685
Alignment:
| Q |
1 |
agaccttttcctaactcttctcagcattcgacaaacttttatgatcgttttcagttttcgggtattcctgctccaaggaatatttatgatgataatgtga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |
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| T |
43489917 |
agaccttttcctaactcttctcagcattcgacaaacttttatgatcgttttcagttttcgggtattcctcctgcaaggaatgtttatgatgataatgtga |
43489818 |
T |
|
| Q |
101 |
ttagggcttcttctgtggcttctcatctacaatcttcatcatcgtcgccagcttcttctttgtcatcatcttcttctgcatttgtttcttctatgcaggg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43489817 |
ttagggcttcttctatggcttctcatctacaatcttcatcatcgtcgccagcttcttctttgtcatcatcttcttctgcatttgtttcttctatgcaggg |
43489718 |
T |
|
| Q |
201 |
caatacttcagtttcctcgtatttttcttctca |
233 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
43489717 |
caatacttcagtttcctcgtatttttctactca |
43489685 |
T |
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