View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_48 (Length: 238)
Name: NF12779_low_48
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16753226 - 16753447
Alignment:
| Q |
1 |
ctttttggatggggatagttggttgcctcaaactggtgtttaatacttcagtggattgatcatataattaaacagaacaaagctagtatttaaaatcaga |
100 |
Q |
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| T |
16753226 |
ctttttggatggggatagttggttgcctcaaactggtgtttaatacttcagtggattgataatataattaaacagaacaa-gctagtatttaaaatcaga |
16753324 |
T |
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| Q |
101 |
tcagaaaagattattagtttagtgtaattaccttacaagtcgactttgaagagtccatgaatcatcaataaagtgagctgtaactgtcatatagccttta |
200 |
Q |
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| T |
16753325 |
tcagaaaagattattagtttagtgtaattaccttacaagtcgactttgaagagtccatgaatcatcaataaagtgagctgtaactgtcatatagccttta |
16753424 |
T |
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| Q |
201 |
ttttggttacttgaagtccacat |
223 |
Q |
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| T |
16753425 |
ttttggttacttgaagtccacat |
16753447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 40570207 - 40570099
Alignment:
| Q |
115 |
tagtttagtgtaattaccttacaagtcgactttgaagagtccatgaatcatcaataaagtgagctgtaactgtcatatagcctttattttggttacttga |
214 |
Q |
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| T |
40570207 |
tagtttagtattattaccttacaagtcgactttgaagggtccacgagtcatcaataaagtgggttgtgactgtcatataacctttattttggttacttga |
40570108 |
T |
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| Q |
215 |
agtccacat |
223 |
Q |
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| T |
40570107 |
agtccacat |
40570099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 44474050 - 44473934
Alignment:
| Q |
1 |
ctttttggatggggatagttggttgcctcaaactggtgtttaatacttcagtggattgatcatataattaaacagaacaaagctagtatttaaaatcaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| | ||||| ||| |
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| T |
44474050 |
ctttttggatggggatagttggttgcctcaaactggtgtttcatacttgagtggattgatcatataattaaacagaac-aagctagtctataaaaataga |
44473952 |
T |
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| Q |
101 |
tcagaaaagattattagt |
118 |
Q |
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|||| ||||||||||||| |
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| T |
44473951 |
tcagcaaagattattagt |
44473934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 42623893 - 42623785
Alignment:
| Q |
115 |
tagtttagtgtaattaccttacaagtcgactttgaagagtccatgaatcatcaataaagtgagctgtaactgtcatatagcctttattttggttacttga |
214 |
Q |
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| T |
42623893 |
tagtttagtattattaccttacaagtcgactttgaagggtccacgagtcatcaataaagtgggctgtgactgtcatataacctttattttggttacttga |
42623794 |
T |
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| Q |
215 |
agtccacat |
223 |
Q |
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||||||||| |
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| T |
42623793 |
agtccacat |
42623785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 20673039 - 20672977
Alignment:
| Q |
161 |
atcatcaataaagtgagctgtaactgtcatatagcctttattttggttacttgaagtccacat |
223 |
Q |
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| T |
20673039 |
atcatcaatatagtgagctgtaatggtcatataccctttcttttggttactagatgtccacat |
20672977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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