View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_49 (Length: 232)
Name: NF12779_low_49
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 4777639 - 4777505
Alignment:
| Q |
79 |
taaaatcaatttagtaccttcgaagaatcaagaatcatgtcaggggagagccagaaggttgtaggattggtatcagaggaagcttggtcaaatccagcca |
178 |
Q |
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| T |
4777639 |
taaaatcaatttagtacctttgaagaatcaagaatcatgtcaggggacagccagaatgttgtaggattggtatcataggaagcttggtcaaatgcagcca |
4777540 |
T |
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| Q |
179 |
taggagggacattgcattggaagttaataggactt |
213 |
Q |
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| T |
4777539 |
taggagggacattgcattggaagttaataggactt |
4777505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4778986 - 4778900
Alignment:
| Q |
1 |
tgatttatatttgaatgcattcgtataaaagttagttgaatgttagaatcaattctatataagagcattcaaacatattaaaatcaa |
87 |
Q |
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| T |
4778986 |
tgatttatatctgaatgcatttgtataaaagttagttggatgttagaatcaattctatataagagcattcaaacatattaaaatcaa |
4778900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 40651465 - 40651518
Alignment:
| Q |
93 |
taccttcgaagaatcaagaatcatgtcaggggagagccagaaggttgtaggatt |
146 |
Q |
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| T |
40651465 |
tacctttgaagaatcaagaatcatatcaggggagatccagaaggttgaaggatt |
40651518 |
T |
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