View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_52 (Length: 229)
Name: NF12779_low_52
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 38933697 - 38933481
Alignment:
| Q |
6 |
agagtatgtatgggtccaaacaaaaagccctgacatgttgcatttaattctcttttctgtttgaagctggagtgtgtacacttttctgtctttaacttag |
105 |
Q |
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| T |
38933697 |
agagtatgtatgggtccacacaaaaagccctgacatgttgcatttaattctcttttctgtttgaagctggagtgtgtacacttttctgtctttaacttag |
38933598 |
T |
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| Q |
106 |
tagtactcactggttcgtaattggaagctagtagcattcaattcatgcatgtaacacagaatgttataatttcaagaaattttgaccaagtaaatacaaa |
205 |
Q |
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| T |
38933597 |
tagaactcactggttcgtaattggaagctagtagcattcaattcatgcatgtaacacagaatgttataatttcaagaaattttgaccaagtaaatacaaa |
38933498 |
T |
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| Q |
206 |
taagtttgattttaatt |
222 |
Q |
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| T |
38933497 |
taagtttgaatttaatt |
38933481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 32670932 - 32670903
Alignment:
| Q |
36 |
tgacatgttgcatttaattctcttttctgt |
65 |
Q |
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| T |
32670932 |
tgacatgttgcatttaattctcttttctgt |
32670903 |
T |
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