View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_56 (Length: 220)
Name: NF12779_low_56
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 18100743 - 18100931
Alignment:
| Q |
16 |
taggagtagctttatgagtaccagatacattgtgcaccatagtagaaacagaaacattaaaagcgtttggacaatttaacgagcttatttgatgaagcct |
115 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18100743 |
taggggtagctttatgagaaccagatacattgtgcaccatagtagaaacagaaacattaaaagcgtttggacaatttaacgagcttatttgatgaagcct |
18100842 |
T |
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| Q |
116 |
gattccacagaagcataatatggcatcacaactagcatttggtgtcggtattataatgttccggtcgcgaagcgagtcttgaagggagt |
204 |
Q |
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| T |
18100843 |
gattccacagaagcataatatggcatcacaactagcatttggtgtcggtattataatgttccggtcgcgaagcgagtcttgaagggagt |
18100931 |
T |
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Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 37858351 - 37858539
Alignment:
| Q |
16 |
taggagtagctttatgagtaccagatacattgtgcaccatagtagaaacagaaacattaaaagcgtttggacaatttaacgagcttatttgatgaagcct |
115 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858351 |
taggggtagctttatgagaaccagatacattgtgcaccatagtagaaacagaaacattaaaagcgtttggacaatttaacgagcttatttgatgaagcct |
37858450 |
T |
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| Q |
116 |
gattccacagaagcataatatggcatcacaactagcatttggtgtcggtattataatgttccggtcgcgaagcgagtcttgaagggagt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858451 |
gattccacagaagcataatatggcatcacaactagcatttggtgtcggtattataatgttccggtcgcgaagcgagtcttgaagggagt |
37858539 |
T |
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