View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_6 (Length: 488)
Name: NF12779_low_6
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 35163575 - 35163119
Alignment:
| Q |
19 |
agtagctgagtgcaaaatggtagactacataatattccttctaagacaaagaattatatattcacagcccaagcatcaagcctgtacagtgcatcaccca |
118 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35163575 |
agtagctaagtgcaaaatggtagactacataatattccttctaagacaaagaattatatattcacagcccaagcatcaagcctgtacagtgcatcaccca |
35163476 |
T |
|
| Q |
119 |
ttgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccggcaacccctatccggataaaggttcctccagccttgttcacg |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35163475 |
ttgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccggcaacccctatccggataaaggttcctccagccttgttcatg |
35163376 |
T |
|
| Q |
219 |
cagacctgccccaccattcatttaccaacaacttacctacaacaattaaactgtccaatttttctcnnnnnnnnnnnnnnnnnttaaacggtccaatgtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35163375 |
cagacctgccccaccattcatttaccaacaacttacctacaacaattaaactgtccaatttttctcaaaaacaaaaaaaaaaattaaacggtccaatgtt |
35163276 |
T |
|
| Q |
319 |
tgcagatggggggaaggccacacaaacaggcaattctactaccaccaacgagtggaatggagaggaaagctaagagttgaaacagagaaaggcggggagt |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35163275 |
tgcagatggggggaaggccacacaaacaggcaattctactaccaccaacgagtggaatggagaggaaagctaagagttgaaacagagaaaggcggggagt |
35163176 |
T |
|
| Q |
419 |
ataaatcgacgatataagattccggcaactctaatattgccgtcaaaatgttcagtg |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35163175 |
ataaatcgacgatataagattccggcaactctaatattgccgtcaaaatgttcagtg |
35163119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 39846757 - 39846500
Alignment:
| Q |
19 |
agtagctgagtgcaaaatggtagactacataatattccttctaagacaaagaattatatattcacagcccaagcatcaagcctgtacagtgcatcaccca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
39846757 |
agtagctgagtgcaaaatggtagactacataatattccttctaagacagagaattatatattcacagcccaagcatcaggcctgtacagttcatcaccca |
39846658 |
T |
|
| Q |
119 |
ttgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccggcaacccctatccggataaaggttcctccagccttgttcacg |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39846657 |
ttgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccacccc-gcaacccctatccggacaaaggttcctccagccttgttcacg |
39846559 |
T |
|
| Q |
219 |
cagacctgccccaccattcatttaccaacaacttacctacaacaattaaactgtccaat |
277 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
39846558 |
cagacgtgccccaccattcatttaccaacaacttacctacaacaattacacggtccaat |
39846500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 39841704 - 39841448
Alignment:
| Q |
19 |
agtagctgagtgcaaaatggtagactacataatattccttctaagacaaagaattatatattcacagcccaagcatcaagcctgtacagtgcatcaccca |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
39841704 |
agtagctgagtgcaaaatggtagactaaataatattccttctaagacaaagaat-atatattcacagcccaagcatcaggcctgtacagttcatcaccca |
39841606 |
T |
|
| Q |
119 |
ttgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccggcaacccctatccggataaaggttcctccagccttgttcacg |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
39841605 |
ttgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccacccc-gcaacccctatctggacaaaggttcctccagccttgttcacg |
39841507 |
T |
|
| Q |
219 |
cagacctgccccaccattcatttaccaacaacttacctacaacaattaaactgtccaat |
277 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39841506 |
cagacgtgccccaccattcatttaccaacaacttacctacaacaattaaacggtccaat |
39841448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 44796608 - 44796847
Alignment:
| Q |
19 |
agtagctgagtgcaaaatggtagactacataatattccttctaagacaaagaattatatattcacagcccaagcatcaagcctgtacagtgcatcaccca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
44796608 |
agtagctgagtgcaaaatggtagactacataatattccttctaagacagagaattatatattcacagcccaagcatcaagcctgtacaattcatcaccca |
44796707 |
T |
|
| Q |
119 |
ttgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccaccccggcaacccctatccggataaaggttcctccagccttgttcacg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
44796708 |
ttgctgaaaagattaataagagacaaaagtcactgtccagcggatctccaccacccc-gcaacccctatccggacaaaggttcctctagccttgttcacg |
44796806 |
T |
|
| Q |
219 |
cagacctgccccaccattcatttaccaacaacttacctaca |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
44796807 |
cagacctgccccaccattcatttaccaacaacttacctaca |
44796847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 302 - 475
Target Start/End: Complemental strand, 39841461 - 39841288
Alignment:
| Q |
302 |
ttaaacggtccaatgtttgcagatggggggaaggccacacaaacaggcaattctactaccaccaacgagtggaatggagaggaaagctaagagttgaaac |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39841461 |
ttaaacggtccaatgtttgcagatggggggaaggccacacaaacaggcaattctactaccaccaacgagtggaatggagagaaaagctaagagttgaaac |
39841362 |
T |
|
| Q |
402 |
agagaaaggcggggagtataaatcgacgatataagattccggcaactctaatattgccgtcaaaatgttcagtg |
475 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39841361 |
agagaaaggcggggagtataaatccacgatataagattccggcaactctaatattgccgccaaaatgttcagtg |
39841288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 306 - 475
Target Start/End: Complemental strand, 39846509 - 39846340
Alignment:
| Q |
306 |
acggtccaatgtttgcagatggggggaaggccacacaaacaggcaattctactaccaccaacgagtggaatggagaggaaagctaagagttgaaacagag |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39846509 |
acggtccaatgtttgcagatggggggaaggccacacaaacaggcaattctactaccaccaacgagtggaatggagagaaaagctaagagttgaaacagag |
39846410 |
T |
|
| Q |
406 |
aaaggcggggagtataaatcgacgatataagattccggcaactctaatattgccgtcaaaatgttcagtg |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39846409 |
aaaggcggggagtataaatcgacgatataagattccggcaactctaatattgccgccaaaatgttcagtg |
39846340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 326 - 475
Target Start/End: Original strand, 44796852 - 44797001
Alignment:
| Q |
326 |
ggggggaaggccacacaaacaggcaattctactaccaccaacgagtggaatggagaggaaagctaagagttgaaacagagaaaggcggggagtataaatc |
425 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44796852 |
ggggggaatgccacacaaacaggcaattctactaccaccaacgagtggaatggagaggaaagctaagagttgaaacagagaaaggcggggagtataaatc |
44796951 |
T |
|
| Q |
426 |
gacgatataagattccggcaactctaatattgccgtcaaaatgttcagtg |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
44796952 |
gacgatataagattccggcaactctaatattgccgccaaaatgttcagtg |
44797001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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