View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_7 (Length: 484)
Name: NF12779_low_7
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 121 - 416
Target Start/End: Complemental strand, 11397322 - 11397027
Alignment:
| Q |
121 |
cccatattaaaatgctcaaatccctcaagaatacctcattactcaagtctctagccattttagcatgagctgcttcttgagcaaattgcatggttaaccg |
220 |
Q |
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| T |
11397322 |
cccatattaaaatgctcaaatccctcaagaatacctcattactcaagtgtttagccattttagcatgagctgcttcttgagcaaattgcatggctaaccg |
11397223 |
T |
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| Q |
221 |
tgcttcagcttcttcctcttctcgtctagtttcctacaattcaataaccccagatgatataacaagtaagtgccaagaggttgtttttaagacaataatt |
320 |
Q |
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| T |
11397222 |
tgcttcagcttcttcctcttctcgtctagtttcctacaatttaataaccccagatgatataacaagtaagtgccaagaggttgtttttaagacaataatt |
11397123 |
T |
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| Q |
321 |
aagaaattttgaagataaaataggaccacaatactgatcaattagtaatcaaattctatccaacacaacaattggtcaaaggtaggaaacaaatag |
416 |
Q |
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| T |
11397122 |
aacaaatttggaagatgaaataggaccacaatactgatcaattagtaatcaaattccatccaacacaacaattggtcaaaggtaggaaacaaatag |
11397027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 138 - 402
Target Start/End: Original strand, 10732695 - 10732957
Alignment:
| Q |
138 |
aaatccctcaagaatacctcattactcaagtctctagccattttagcatgagctgcttcttgagcaaattgcatggttaaccgtgcttcagcttcttcct |
237 |
Q |
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| T |
10732695 |
aaatccctaacgaatacctcattactcaagtctctagccattttagcatgaactgcttcttgagcaaattgcatggctaaccgtgcttcagcttcttcct |
10732794 |
T |
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| Q |
238 |
cttctcgtctagtttcctacaattcaataaccccagatgatataacaagtaagtgccaagaggttgtttttaagacaataattaagaaattttgaagata |
337 |
Q |
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| T |
10732795 |
cttctcgtctagtttcctacaattcaataaccccagatg--ataacaagtaagtgccaagaggttgtttttaagacaatatttaacaaattttgaacatg |
10732892 |
T |
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| Q |
338 |
aaataggaccacaatactgatcaattagtaatcaaattctatccaacacaacaattggtcaaagg |
402 |
Q |
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| T |
10732893 |
aaataggaccacaatattgatcaatttgtaatcaaattccatccaacacaacagttggttaaagg |
10732957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 11397388 - 11397341
Alignment:
| Q |
46 |
tttaacaaccatctcccgaagctcttttaaatgcaaatcaacttcatc |
93 |
Q |
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| T |
11397388 |
tttaacaaccatctcccggagctcttctaaatgcaaatcaacttcatc |
11397341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 475
Target Start/End: Original strand, 10733859 - 10733920
Alignment:
| Q |
414 |
tagcatgcattgtccacaaggttgtctctaggactttctatcaatcaacaatgttttcttct |
475 |
Q |
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| T |
10733859 |
tagcaggcattgtccacaaggttgtctcgagaagtttctatcaatcaacgttgttttcttct |
10733920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 10732565 - 10732612
Alignment:
| Q |
46 |
tttaacaaccatctcccgaagctcttttaaatgcaaatcaacttcatc |
93 |
Q |
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| T |
10732565 |
tttaacaaccatctcccggagctcttctaaatgtacatcaacttcatc |
10732612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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