View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1277A-Insertion-12 (Length: 826)

Name: NF1277A-Insertion-12
Description: NF1277A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1277A-Insertion-12
NF1277A-Insertion-12
[»] chr3 (1 HSPs)
chr3 (7-826)||(51821565-51822385)


Alignment Details
Target: chr3 (Bit Score: 781; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 7 - 826
Target Start/End: Original strand, 51821565 - 51822385
Alignment:
Q  7 aaaagaaaggaccaaaaccaaaattatagtgaaacaaagaacaagggcacggacatcttttgacgagccactattctcagaacaacgcttgaaggaacca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51821565 aaaagaaaggaccaaaaccaaaattatagtgaaacaaagaacaagggcacggacatcttttgacaagccactattctcagaacaacgcttgaaggaacca 51821664  T
Q  107 atagcatcaagcgtgcataaacccgggtttccggtgaggcttccattgtaagcttgaatagtcaaacctattggaatttcaccggataatcggttatgcg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51821665 atagcatcaagcgtgcataaacccgggtttccggtgaggcttccattgtaagcttgaatagtcaaacctattggaatttcaccggataatcggttatgcg 51821764  T
Q  207 aaagatcaaagagactcaacttcaatgaacctaaactctctggtattttaccggaaagttcattctctgagaaattcagagaatttaaagccggtaacaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51821765 aaagatcaaagagactcaacttcaatgaacctaaactctctggtattttaccggaaagttcattctctgagaaattcagagaatttaaagccggtaacaa 51821864  T
Q  307 acccaaggaagaaggaatatctttcgagagttcatttctcgaaagatcaacgtcgttgagtgagttacaataacctaaagactccggaattacccctgtt 406  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51821865 acccaaggacgaaggaatatctttcgagagttcatttctcgaaagatcaacgtcgttgagtgagttacaataacctaaagactccggaattacccctgtt 51821964  T
Q  407 aacttgttaccctgcaaatgcaggttaccaagttgttgaagttgaccaataccttctggaatgttcccagaaatttgattgttactaagatcaattgata 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51821965 aacttgttaccctgcaaatgcaggttaccaagttgttgaagttgaccaataccttctggaatgttcccagaaatttgattgttactaagatcaattgata 51822064  T
Q  507 ccaacgacgttgctttagaaatctcttccggtatttcaccggttaaccggttactccttgcgaatatactagcaagtttattcgccttttgaatctctga 606  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51822065 ccaacgacgttgctttagaaatctcttccggtatttcacccgttaaccggttactccttgcgaatatactagcaagtttattcgctttttgaatctctga 51822164  T
Q  607 acttacggaaccttctaactgattcaattcaacatcaattacttgaacattgggtaatccccaaataccggaaggaacggtacctgagagcgagtttcta 706  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51822165 actaacggaaccttctaactgattcaattcaacatcaattacttgaacattgggtaatccccaaataccggaaggaacggtacctgagagcgagtttcta 51822264  T
Q  707 ctcactctgaatcgttctaaactcaaacaggtgctgtggctttccggtatcttacctgtgagattgttctgaagaagaagaagtgcgtaca-ttttcctt 805  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51822265 ctcactctgaggcgttctaaactcaaacaggtgctgtagctttccggtatcttacctgtgagattgttctgaagaagaagaagtgcgtacatttttcctt 51822364  T
Q  806 tgttgcacatgtttggtggaa 826  Q
    |||||||||||||||||||||    
T  51822365 tgttgcacatgtttggtggaa 51822385  T

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