View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277A-Insertion-14 (Length: 730)
Name: NF1277A-Insertion-14
Description: NF1277A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277A-Insertion-14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 346 - 730
Target Start/End: Complemental strand, 41137480 - 41137096
Alignment:
| Q |
346 |
gatactgtattaaggttttaaactgtgcttattacgctgcaagcatttaatattgatgcataatgcgaaaaa-tgtggttgacgcggttgaattgctgtt |
444 |
Q |
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| T |
41137480 |
gatactgtattaaggttttaaactgtgcttattacgctgcaagcatttaatattgatgcataatgcgaaaaaatgtggttgacgcggttgaattgctgct |
41137381 |
T |
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| Q |
445 |
gtgataccgttgcagagactttaaaatcctttatattgcagctgcagaccataatttaaaactatactaattagcttaattggggatccttatttcactg |
544 |
Q |
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| T |
41137380 |
gtgataccgttgcagagactttaaaatcctttatattgcagttgcagaccataatttaaaactatactaattagcttaattggggatccttatttcactg |
41137281 |
T |
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| Q |
545 |
ggtggatatttgaatatattatcatattatgtgacaactaacattggtgtttttataatgaaaggatggaattaatgctgaaccattatttacaattttg |
644 |
Q |
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| T |
41137280 |
ggtggatatttgaatatattatcatattatgtgacaactaacattggtgtttttataatgaaaggatggaattaatgctgaaccattatttacaattttg |
41137181 |
T |
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| Q |
645 |
aatatttaactggctttagtggattttgaaaatgattctttcattccannnnnnnaaaccgaataaaataattatatcattcttat |
730 |
Q |
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| T |
41137180 |
aatatttaactggctttagtggattttgaaaatgattctttcattccatttttttaaaccaaat-aaataattatatcattcttat |
41137096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 41137816 - 41137538
Alignment:
| Q |
8 |
tcagtgtcgtatcgagtgtctgtcgttatttatttcnnnnnnnacacatgatgcaggagaatttttgggatattttggtggggcaaatatactaatggag |
107 |
Q |
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| T |
41137816 |
tcagtgtcgtatcgagtgtctgtcgttatttatttctttttttacacatgatgcaggagaatttttgggatattttggtggggcaaatatactaatggag |
41137717 |
T |
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| Q |
108 |
tatgttttttcaaatgctgctgtagctaggagttttacggaatatttgagttttgcttttggagaaaataatcccaatgtatggagagtagaagttcatg |
207 |
Q |
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| T |
41137716 |
tatgttttttcaaatgctgctgtagctaggagttttacagaatatttgagttttgcttttggagaaaataatcccaatgtatggagagtagaagttcatg |
41137617 |
T |
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| Q |
208 |
gattgccaaaggattataacatgttggattttccagcagtagctctcattcttctctctcgactctttgcttgtgtcatag |
288 |
Q |
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| T |
41137616 |
gattgccaaaggattataacatgttggattttccagcagtagctctcattcttctc-ctc-actctttgcttgtgtcatag |
41137538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 509
Target Start/End: Original strand, 16812344 - 16812418
Alignment:
| Q |
435 |
aattgctgttgtgataccgttgcagagactttaaaatcctttatattgcagctgcagaccataatttaaaactat |
509 |
Q |
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| T |
16812344 |
aattgcggttgtgatgccgttgtggaagccttaaaatcctctatattgaagttgcagaccacaatttaaaactat |
16812418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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