View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277A-Insertion-15 (Length: 341)
Name: NF1277A-Insertion-15
Description: NF1277A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277A-Insertion-15 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 14241974 - 14241640
Alignment:
| Q |
8 |
gaagcctcggatttcattgcctttggaattagcttcaaagtattttcatacttctatcaatattgtataccagaaaatgttgaacctaccaacaaaatcg |
107 |
Q |
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| T |
14241974 |
gaagccttggatttcattgcctttggaattagcttcaaggtattttcatacttctatcaatattgtataccagaaaatgctgaac-taccaacaaaatcg |
14241876 |
T |
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| Q |
108 |
tcattattattatgctaattatgaaaagaattaacatgttccagnnnnnnnttcaatgttgttgtattacagaatgatgcacctactgggatagcctata |
207 |
Q |
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| T |
14241875 |
tcattattattatgctaattatgaaaagaattaacattttccagaaaaaa-ttcaatgtttttgtattacagaatgatgcacctactgggatagcctata |
14241777 |
T |
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| Q |
208 |
cttcacaaaatcaatctgtggcagcagaaaaagcagcattttatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagacatta |
307 |
Q |
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| T |
14241776 |
cttcacaaaatcaatatgtggcagcagaaaaagcagcattttatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagacatta |
14241677 |
T |
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| Q |
308 |
ctacgagtct---tgttacattcaaggttccattgat |
341 |
Q |
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| T |
14241676 |
ctacgagtcttgttgttacattcaaggttccattgat |
14241640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 161 - 341
Target Start/End: Original strand, 12957147 - 12957339
Alignment:
| Q |
161 |
caatgttgttgtattacagaatgatgcacctactgggatagcctatacttcacaaaatcaatctgtg------------gcagcagaaaaagcagcattt |
248 |
Q |
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| T |
12957147 |
caatgttgttgcattatagaatgatgcacctacaggagttgcctatacttcacaaaatcaatctgtggcagcatttgtggcagcagagaaagctgcattt |
12957246 |
T |
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| Q |
249 |
tatcattgtgcattttatagttcacacaacacgctctttgattacaaaggaagacattactacgagtcttgttacattcaaggttccattgat |
341 |
Q |
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| T |
12957247 |
tatcattgtgcattttacagtacacacaacacactctttgattacaaaggtagacattactatgagtcttgttacattcaaggctccattgat |
12957339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 12956625 - 12956721
Alignment:
| Q |
8 |
gaagcctcggatttcattgcctttggaattagcttcaaagtattttcatac-ttctatcaatattgtataccagaaaatgttgaacctaccaacaaaa |
104 |
Q |
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| T |
12956625 |
gaagcccccgatttcattgcctttggaattagcttcaaggtaatatcatactttctactaatattgtataccataaaatgttgaa-ttaccaacaaaa |
12956721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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