View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1277A-Insertion-2 (Length: 346)

Name: NF1277A-Insertion-2
Description: NF1277A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1277A-Insertion-2
NF1277A-Insertion-2
[»] chr8 (5 HSPs)
chr8 (304-335)||(6365981-6366012)
chr8 (305-335)||(12032948-12032978)
chr8 (305-335)||(37301481-37301511)
chr8 (306-335)||(37956418-37956447)
chr8 (307-335)||(43328705-43328733)
[»] chr4 (10 HSPs)
chr4 (304-335)||(39587935-39587966)
chr4 (304-335)||(41949377-41949408)
chr4 (305-335)||(56023154-56023184)
chr4 (306-335)||(55056415-55056444)
chr4 (307-335)||(407752-407780)
chr4 (307-335)||(1932761-1932789)
chr4 (307-335)||(29777413-29777441)
chr4 (307-335)||(42765997-42766025)
chr4 (307-335)||(50457966-50457994)
chr4 (307-335)||(53854585-53854613)
[»] chr1 (10 HSPs)
chr1 (304-335)||(5981165-5981196)
chr1 (305-335)||(36566326-36566356)
chr1 (306-335)||(5980065-5980094)
chr1 (306-335)||(23221085-23221114)
chr1 (306-335)||(49399144-49399173)
chr1 (307-335)||(4156221-4156249)
chr1 (307-335)||(17995107-17995135)
chr1 (307-335)||(31040707-31040735)
chr1 (307-335)||(46967197-46967225)
chr1 (307-335)||(49254131-49254159)
[»] chr7 (3 HSPs)
chr7 (305-335)||(31586845-31586875)
chr7 (306-335)||(40670561-40670590)
chr7 (307-335)||(35767480-35767508)
[»] chr6 (5 HSPs)
chr6 (305-335)||(5882502-5882532)
chr6 (305-335)||(30467759-30467789)
chr6 (307-335)||(19281211-19281239)
chr6 (307-335)||(24168089-24168117)
chr6 (303-335)||(28947081-28947113)
[»] chr3 (10 HSPs)
chr3 (305-335)||(40419831-40419861)
chr3 (306-335)||(2665997-2666026)
chr3 (306-335)||(24376570-24376599)
chr3 (298-335)||(44806673-44806710)
chr3 (307-335)||(7755462-7755490)
chr3 (307-335)||(36368937-36368965)
chr3 (307-335)||(39053392-39053420)
chr3 (307-335)||(47257791-47257819)
chr3 (307-335)||(51942561-51942589)
chr3 (307-335)||(53943743-53943771)
[»] chr2 (6 HSPs)
chr2 (305-335)||(27024410-27024440)
chr2 (305-335)||(27651190-27651220)
chr2 (306-335)||(40037139-40037168)
chr2 (307-335)||(746463-746491)
chr2 (307-335)||(2325045-2325073)
chr2 (307-335)||(4034589-4034617)
[»] scaffold0092 (1 HSPs)
scaffold0092 (306-335)||(39712-39741)
[»] scaffold0155 (1 HSPs)
scaffold0155 (307-335)||(2588-2616)
[»] scaffold0100 (1 HSPs)
scaffold0100 (307-335)||(32559-32587)
[»] scaffold0076 (1 HSPs)
scaffold0076 (307-335)||(13918-13946)
[»] scaffold0035 (1 HSPs)
scaffold0035 (307-335)||(75400-75428)
[»] chr5 (3 HSPs)
chr5 (300-335)||(3466837-3466873)
chr5 (307-335)||(27278633-27278661)
chr5 (307-335)||(40886183-40886211)


Alignment Details
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 335
Target Start/End: Original strand, 6365981 - 6366012
Alignment:
Q  304 atttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||||    
T  6365981 atttggttttttctagattacctttgaagaat 6366012  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 12032948 - 12032978
Alignment:
Q  305 tttggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||||    
T  12032948 tttggttttttctagattacctttgaagaat 12032978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 37301511 - 37301481
Alignment:
Q  305 tttggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||||    
T  37301511 tttggttttttctagattacctttgaagaat 37301481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 37956418 - 37956447
Alignment:
Q  306 ttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||    
T  37956418 ttggttttttctagattacctttgaagaat 37956447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 43328705 - 43328733
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  43328705 tggttttttctagattacctttgaagaat 43328733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 335
Target Start/End: Complemental strand, 39587966 - 39587935
Alignment:
Q  304 atttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||||    
T  39587966 atttggttttttctagattacctttgaagaat 39587935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 335
Target Start/End: Original strand, 41949377 - 41949408
Alignment:
Q  304 atttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||||    
T  41949377 atttggttttttctagattacctttgaagaat 41949408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 56023184 - 56023154
Alignment:
Q  305 tttggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||||    
T  56023184 tttggttttttctagattacctttgaagaat 56023154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 55056444 - 55056415
Alignment:
Q  306 ttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||    
T  55056444 ttggttttttctagattacctttgaagaat 55056415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 407752 - 407780
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  407752 tggttttttctagattacctttgaagaat 407780  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 1932761 - 1932789
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  1932761 tggttttttctagattacctttgaagaat 1932789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 29777441 - 29777413
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  29777441 tggttttttctagattacctttgaagaat 29777413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 42766025 - 42765997
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  42766025 tggttttttctagattacctttgaagaat 42765997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 50457994 - 50457966
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  50457994 tggttttttctagattacctttgaagaat 50457966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 53854613 - 53854585
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  53854613 tggttttttctagattacctttgaagaat 53854585  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 335
Target Start/End: Original strand, 5981165 - 5981196
Alignment:
Q  304 atttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||||    
T  5981165 atttggttttttctagattacctttgaagaat 5981196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 36566326 - 36566356
Alignment:
Q  305 tttggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||||    
T  36566326 tttggttttttctagattacctttgaagaat 36566356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 5980065 - 5980094
Alignment:
Q  306 ttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||    
T  5980065 ttggttttttctagattacctttgaagaat 5980094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 23221114 - 23221085
Alignment:
Q  306 ttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||    
T  23221114 ttggttttttctagattacctttgaagaat 23221085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 49399173 - 49399144
Alignment:
Q  306 ttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||    
T  49399173 ttggttttttctagattacctttgaagaat 49399144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 4156249 - 4156221
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  4156249 tggttttttctagattacctttgaagaat 4156221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 17995135 - 17995107
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  17995135 tggttttttctagattacctttgaagaat 17995107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 31040707 - 31040735
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  31040707 tggttttttctagattacctttgaagaat 31040735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 46967225 - 46967197
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  46967225 tggttttttctagattacctttgaagaat 46967197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 49254159 - 49254131
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  49254159 tggttttttctagattacctttgaagaat 49254131  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 31586845 - 31586875
Alignment:
Q  305 tttggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||||    
T  31586845 tttggttttttctagattacctttgaagaat 31586875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 40670561 - 40670590
Alignment:
Q  306 ttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||    
T  40670561 ttggttttttctagattacctttgaagaat 40670590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 35767480 - 35767508
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  35767480 tggttttttctagattacctttgaagaat 35767508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 5882502 - 5882532
Alignment:
Q  305 tttggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||||    
T  5882502 tttggttttttctagattacctttgaagaat 5882532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 30467789 - 30467759
Alignment:
Q  305 tttggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||||    
T  30467789 tttggttttttctagattacctttgaagaat 30467759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 19281239 - 19281211
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  19281239 tggttttttctagattacctttgaagaat 19281211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 24168089 - 24168117
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  24168089 tggttttttctagattacctttgaagaat 24168117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 28947081 - 28947113
Alignment:
Q  303 catttggttttttctagattacctttgaagaat 335  Q
    |||| ||||||||||||||||||||||||||||    
T  28947081 cattaggttttttctagattacctttgaagaat 28947113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 40419831 - 40419861
Alignment:
Q  305 tttggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||||    
T  40419831 tttggttttttctagattacctttgaagaat 40419861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 2665997 - 2666026
Alignment:
Q  306 ttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||    
T  2665997 ttggttttttctagattacctttgaagaat 2666026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 24376570 - 24376599
Alignment:
Q  306 ttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||    
T  24376570 ttggttttttctagattacctttgaagaat 24376599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 44806673 - 44806710
Alignment:
Q  298 tttaccatttggttttttctagattacctttgaagaat 335  Q
    ||||| || |||||||||||||||||||||||||||||    
T  44806673 tttacaatatggttttttctagattacctttgaagaat 44806710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 7755490 - 7755462
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  7755490 tggttttttctagattacctttgaagaat 7755462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 36368937 - 36368965
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  36368937 tggttttttctagattacctttgaagaat 36368965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 39053392 - 39053420
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  39053392 tggttttttctagattacctttgaagaat 39053420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 47257791 - 47257819
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  47257791 tggttttttctagattacctttgaagaat 47257819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 51942589 - 51942561
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  51942589 tggttttttctagattacctttgaagaat 51942561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 53943771 - 53943743
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  53943771 tggttttttctagattacctttgaagaat 53943743  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 27024410 - 27024440
Alignment:
Q  305 tttggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||||    
T  27024410 tttggttttttctagattacctttgaagaat 27024440  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 27651220 - 27651190
Alignment:
Q  305 tttggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||||    
T  27651220 tttggttttttctagattacctttgaagaat 27651190  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 40037139 - 40037168
Alignment:
Q  306 ttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||    
T  40037139 ttggttttttctagattacctttgaagaat 40037168  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 746463 - 746491
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  746463 tggttttttctagattacctttgaagaat 746491  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 2325073 - 2325045
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  2325073 tggttttttctagattacctttgaagaat 2325045  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 4034589 - 4034617
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  4034589 tggttttttctagattacctttgaagaat 4034617  T

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Target: scaffold0092 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 39741 - 39712
Alignment:
Q  306 ttggttttttctagattacctttgaagaat 335  Q
    ||||||||||||||||||||||||||||||    
T  39741 ttggttttttctagattacctttgaagaat 39712  T

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Target: scaffold0155 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 2616 - 2588
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  2616 tggttttttctagattacctttgaagaat 2588  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 32559 - 32587
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  32559 tggttttttctagattacctttgaagaat 32587  T

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Target: scaffold0076 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 13946 - 13918
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  13946 tggttttttctagattacctttgaagaat 13918  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 75428 - 75400
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  75428 tggttttttctagattacctttgaagaat 75400  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 3466873 - 3466837
Alignment:
Q  300 taccattt-ggttttttctagattacctttgaagaat 335  Q
    |||||||| ||||||||||||||||||||||||||||    
T  3466873 taccatttaggttttttctagattacctttgaagaat 3466837  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 27278661 - 27278633
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  27278661 tggttttttctagattacctttgaagaat 27278633  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 40886211 - 40886183
Alignment:
Q  307 tggttttttctagattacctttgaagaat 335  Q
    |||||||||||||||||||||||||||||    
T  40886211 tggttttttctagattacctttgaagaat 40886183  T

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