View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1277A-Insertion-3 (Length: 338)
Name: NF1277A-Insertion-3
Description: NF1277A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277A-Insertion-3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 34228265 - 34227935
Alignment:
| Q |
8 |
tccttaaccattgtcgtgaggacacttgttgtgagcaagagccttgaaattatatacttgttattcaaattaaaccactgactcgaacttattttgttta |
107 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34228265 |
tccttaaccattgtcctgaggacactggttgtcagcaaaacccttgaaattatatacttgttatccaaattaaaccactgactcaaacttattttgttta |
34228166 |
T |
|
| Q |
108 |
ggaaaagattgactttacaagtaaattttggattatcgggttaaaagggtcttttgaacccatgaacaccccaggttgaatggttgatcattgatgttat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34228165 |
cgaaaagattgactttacaagtaaattttggattatcgggttaaaagggtcttttgaacccatgaacagcccaggttgaatggttgatcattgatgttat |
34228066 |
T |
|
| Q |
208 |
caagtgttcattcattgtgtttcactattgaatttccacaaatcgaaaagattaatcgaggacgagtacttaattaactaaccatacacatacnnnnnnn |
307 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34228065 |
catgtgttcattcattgtgtttcactattgaatttccacaaatcgaaaagattaatcgaggacgagtacttaattaactaaccatacacatacaaaaaaa |
34227966 |
T |
|
| Q |
308 |
ggttgatgattgtgatgggagtgtacttgat |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
34227965 |
ggttgatgattgtgatgggagtgtacttgat |
34227935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University