View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277A-Insertion-5 (Length: 769)
Name: NF1277A-Insertion-5
Description: NF1277A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277A-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 361 - 769
Target Start/End: Complemental strand, 11350439 - 11350031
Alignment:
| Q |
361 |
tggtccagctcttcttttaacttaacaatcatgtcatccatgtacacatcaagcatgtctcatatttggtttttgaatatctcattcatcatctttggta |
460 |
Q |
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| T |
11350439 |
tggtccagttcttcttttaacttaacaatcatgtcatccatgtacacatcaagcatgtctcatattttgtttttgaatatctcattcatcatctttggta |
11350340 |
T |
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| Q |
461 |
agtggcttcggtgattttatggccgaacaacattaccttatagcaatgatttcttgtccttagtcaagaaagccctattttcttggtccttaggatccat |
560 |
Q |
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| T |
11350339 |
agtggcttcggtgattttatggccgaacaacattaccttatagcaatgatttcttgtccttagtcaagaaagccctattttcttggtccttaggatccat |
11350240 |
T |
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| Q |
561 |
ggggatctagttataactagagtacgaatccatgaatgatggtaatttaaactcaaatgaattatcaactattttacaaatgtttggggggcggggaatg |
660 |
Q |
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| T |
11350239 |
ggggatctagttataactagagtacgaatccatgaatgatggtaatttaaactcaaatgaattatcaactattttataaatgtttggggggcggggaatg |
11350140 |
T |
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| Q |
661 |
tcctattaagaccagagtagttaacacacatgcctcccttattattagatttcttgcctaatacaacatttgagaacaaagtagtatattatgctctcaa |
760 |
Q |
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| T |
11350139 |
tcctattgagaccagagtagttaacacacatgcctcacttattattagatttcttgcctaatacaacatttgagaaccaagtagtatattatgctctcaa |
11350040 |
T |
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| Q |
761 |
ttataaatc |
769 |
Q |
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| T |
11350039 |
ttacaaatc |
11350031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 11350932 - 11350605
Alignment:
| Q |
7 |
agtatttggtccttgaaggactttgctgatgaaataaaacggtctttgtcattatgtcgtttcacagaccaaaactgcgctgacagcctcattggaaaca |
106 |
Q |
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| T |
11350932 |
agtatttggtccttgaaggactttgctgatgaaataaaacggtttttgtcattatgtcgtttcgcagaccaagactgtgctgacagcctcattggaaata |
11350833 |
T |
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| Q |
107 |
gacaaatataggaacattgtttcgtcttgttcaaaacgggtgggcattgggggctgagaaaaggcccgctttagatttgaggagacttcttgacactctg |
206 |
Q |
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| T |
11350832 |
gacagatataggaacattgtttcgtcttgttcaaa-cgggtgggcattgggggctgagaaagtgcccgctttagatttgaggagacttcttggcactctg |
11350734 |
T |
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| Q |
207 |
gagcccattcaaaggttgtttcctttatgagaacagcaatgtgtggtgggtcgagcggcctttgaaacatgatagggttgtcaacattgcattgagtctc |
306 |
Q |
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| T |
11350733 |
gagcccattcaaaggttgtttcctttatgagaacaataatgtgtggtgggccgagcgggctttgaaacatgatagggttgtcaacattgcattgagtctc |
11350634 |
T |
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| Q |
307 |
tacattcctctcttcatccttagagagac |
335 |
Q |
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| T |
11350633 |
tacattcctctcttcatctttagagagac |
11350605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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