View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277A-Insertion-6 (Length: 633)
Name: NF1277A-Insertion-6
Description: NF1277A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277A-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 45182009 - 45181700
Alignment:
| Q |
7 |
acttcttcgaggcataaataaaatatatacattcaggtatccatcattaattataatcacttcacttcctttattattttagatagtaaactcatgtatc |
106 |
Q |
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| T |
45182009 |
acttcttcgaggca----taaaatatatacattcaggtatccatcattaattataatcacttcacttcctttattattttagatattaaactcatgtatc |
45181914 |
T |
|
| Q |
107 |
tatttcattttggactggctcgagcatcatttagcgacactgcatctactatatactggactgtaagtagtactctaatagtaatacacaaccatgttga |
206 |
Q |
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| T |
45181913 |
tatttcattttggactggctcgagcatcatttagcgacactgcatctactatatactggactgtaagtagtactctaatagtaatacacaaccatgttga |
45181814 |
T |
|
| Q |
207 |
tctgtttcattaaacaattatgttttgccttttaagattttcagatggaacctacaaattataatcagtaattacctctatcaacgtatgcttacttaat |
306 |
Q |
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| T |
45181813 |
tctgtttcattaaacaattatgttttgccttttaagattttcagatggaacgtacaaattataatcagtaattacctctatcaacgtatgcttacttgat |
45181714 |
T |
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| Q |
307 |
ttacctacttttac |
320 |
Q |
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|||||||||||||| |
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| T |
45181713 |
ttacctacttttac |
45181700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 351 - 633
Target Start/End: Complemental strand, 45181702 - 45181420
Alignment:
| Q |
351 |
taccgtgcacctgaactatgtggttcttttttcacaaaagtaagttttttgtttgacatcatattttcttgggttgtgtatgtgtacgtgtacgtgtgat |
450 |
Q |
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| T |
45181702 |
taccgtgcacctgaactatgtggttcttttttcacaaaagtaagttttttgtttgacatcatattttcttgggttgtgtatgtgt----------gtgat |
45181613 |
T |
|
| Q |
451 |
acaagatcaaggtgactacacttgatgtattgaaatat-----------gcatgtaatttataatccttgtcttatgcggtatacccctggaattgatat |
539 |
Q |
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| T |
45181612 |
acaagatcaaggtgactacacttgatgtattgaaatatatattatatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatat |
45181513 |
T |
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| Q |
540 |
ttggaacattggatgcatattttgcagaagtgcttactgggaggccattgtttcctgggacaaatacgaagaaccaattggatatcatgactga |
633 |
Q |
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| T |
45181512 |
ttggagcattggatgcata-tttgcagaagtgcttactgggaggccattgtttcctcggacaaataggaagaaccaattggatatcatgactga |
45181420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 470 - 633
Target Start/End: Complemental strand, 45174690 - 45174528
Alignment:
| Q |
470 |
acttgatgtattgaaatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatatttggaacattggatgcatattttgcagaag |
569 |
Q |
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|||||||||||||||||||| |||||||||||| ||| | |||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
45174690 |
acttgatgtattgaaatatgtatgtaatttatattccctttcttatgcagtatacacctggaattgatatttggagcattggatgcata-tttgcagaaa |
45174592 |
T |
|
| Q |
570 |
tgcttactgggaggccattgtttcctgggacaaatacgaagaaccaattggatatcatgactga |
633 |
Q |
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| T |
45174591 |
tgcttactgggaggccattgtttcctgggaaaaatgtggtgcatcaattggatatcatgactga |
45174528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 211 - 398
Target Start/End: Complemental strand, 45174927 - 45174745
Alignment:
| Q |
211 |
tttcattaaacaattatgttttgcctttt-aagattttcagatggaacctacaaattataatcagtaattacctctatcaac-gtatgcttacttaattt |
308 |
Q |
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|||||| || |||||||||||| |||||| ||||||||||| ||||||||||||||| |||| || ||||||| | ||| | |||| ||||||||| |
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| T |
45174927 |
tttcatcaatcaattatgtttttcctttttaagattttcagttggaacctacaaattgcaatc--tagctacctctctaaaccgcttgctgacttaattt |
45174830 |
T |
|
| Q |
309 |
acctacttttacaaaggactatattatattgcaactaggtggtaccgtgcacctgaactatgtggttcttttttcacaaaagtaagtttt |
398 |
Q |
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| T |
45174829 |
acctacttttaccaaggactatgtt-----gcaactaggtggtaccgtgcacctgaactatgtggttcttttttctcaaaagtaagtttt |
45174745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 477 - 604
Target Start/End: Complemental strand, 29961651 - 29961525
Alignment:
| Q |
477 |
gtattgaaatatgcatgtaatttataatccttgtcttatgcggtatacccctggaattgatatttggaacattggatgcatattttgcagaagtgcttac |
576 |
Q |
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| T |
29961651 |
gtattgaaatatgtatgtaatttcaaattcttgtcttttgcagtatactccagcgattgatatttggagcattggatgcata-tttgcagaaatgcttag |
29961553 |
T |
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| Q |
577 |
tgggaggccattgtttcctgggacaaat |
604 |
Q |
| |
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||| | ||||||||||||||||| |||| |
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| T |
29961552 |
tggcaagccattgtttcctgggaaaaat |
29961525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 29962023 - 29961966
Alignment:
| Q |
337 |
ttgcaactaggtggtaccgtgcacctgaactatgtggttcttttttcacaaaagtaag |
394 |
Q |
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|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
29962023 |
ttgcgactcggtggtatcgtgcacctgaactatgtggttcttttttctcaaaagtaag |
29961966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 526 - 597
Target Start/End: Original strand, 30814718 - 30814788
Alignment:
| Q |
526 |
cctggaattgatatttggaacattggatgcatattttgcagaagtgcttactgggaggccattgtttcctgg |
597 |
Q |
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| T |
30814718 |
cctgcaattgatatatggagcattggttgcat-ttttgcggaagtgcttacaggaaagccattgtttcctgg |
30814788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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