View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1277A-Insertion-8 (Length: 686)

Name: NF1277A-Insertion-8
Description: NF1277A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1277A-Insertion-8
NF1277A-Insertion-8
[»] chr4 (8 HSPs)
chr4 (126-359)||(32649321-32649553)
chr4 (359-470)||(32649169-32649281)
chr4 (448-517)||(32649095-32649164)
chr4 (8-60)||(32649619-32649670)
chr4 (515-559)||(32225581-32225625)
chr4 (518-557)||(23976706-23976745)
chr4 (520-558)||(44376078-44376116)
chr4 (517-558)||(17558824-17558865)
[»] chr2 (3 HSPs)
chr2 (388-557)||(22136279-22136449)
chr2 (557-613)||(32073854-32073910)
chr2 (643-676)||(32073822-32073855)
[»] chr5 (7 HSPs)
chr5 (503-559)||(16349713-16349769)
chr5 (503-557)||(4082574-4082628)
chr5 (520-558)||(30096275-30096313)
chr5 (499-557)||(16222687-16222745)
chr5 (515-557)||(40951482-40951524)
chr5 (520-557)||(25099236-25099273)
chr5 (520-557)||(25158326-25158363)
[»] chr8 (5 HSPs)
chr8 (505-559)||(16367864-16367918)
chr8 (505-557)||(42308123-42308175)
chr8 (520-558)||(405353-405391)
chr8 (513-559)||(771642-771688)
chr8 (529-557)||(17695634-17695662)
[»] chr1 (5 HSPs)
chr1 (520-560)||(28947451-28947491)
chr1 (505-563)||(27840301-27840359)
chr1 (515-557)||(51387129-51387171)
chr1 (505-562)||(47250304-47250361)
chr1 (513-557)||(50293655-50293699)
[»] chr7 (1 HSPs)
chr7 (520-559)||(31097904-31097943)
[»] scaffold0896 (1 HSPs)
scaffold0896 (520-557)||(1109-1146)
[»] chr6 (2 HSPs)
chr6 (520-557)||(8657064-8657101)
chr6 (520-557)||(33289070-33289107)
[»] chr3 (2 HSPs)
chr3 (512-557)||(53693213-53693258)
chr3 (513-557)||(44708227-44708271)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 126 - 359
Target Start/End: Complemental strand, 32649553 - 32649321
Alignment:
Q  126 taacacttctctagcattttgtcatgcataaaatgtctcaactctacttaaaatggcaaggagatgaagcaataaagaacaaggagtagaactttctatt 225  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  32649553 taacaattctctagcattttgtcatgcataaaatgtctcaactctacttaaaatggca-ggagatgaagcaataaagaacaaggagtagaactttctact 32649455  T
Q  226 ataactaattagtttgatagcctgccaatcgttatccttatgcaattcctgatggttaatatcattgtatgcaggccattccgattataaagttgaggat 325  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  32649454 ataactaattagtttgatagcctgccaattgttatccttatgcaattcctgatggttaatatctatgtatgcaggccattccgattataaagttgaggat 32649355  T
Q  326 gcatgttgttcatggtggttaaatttaatgtgtt 359  Q
    ||||||||||||||||||||||||||||||||||    
T  32649354 gcatgttgttcatggtggttaaatttaatgtgtt 32649321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 359 - 470
Target Start/End: Complemental strand, 32649281 - 32649169
Alignment:
Q  359 tctaatgactaaatatactgtcacataagtttagtgaaacaacaaaacacactacgttacat-cgtatatcacgagaccacacataagtctgtaacaaca 457  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  32649281 tctaatgactaagtatactgtcacataagtttagtgacacaacaaaacacacaacgctacattcgtatatcacgagaccacacataagtttgtaacaaca 32649182  T
Q  458 gacatattctctg 470  Q
    |||||||||||||    
T  32649181 gacatattctctg 32649169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 448 - 517
Target Start/End: Complemental strand, 32649164 - 32649095
Alignment:
Q  448 tgtaacaacagacatattctctgtgaaaagttcattcatactaaaatatatttcaaataatgtcttaaac 517  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  32649164 tgtaacaacagacatattttctgcgaaaagttcattcatactacaatatatttcaagtaatgtcttaaac 32649095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 32649670 - 32649619
Alignment:
Q  8 aaaattatgttcccctgtttgattgacattcagttcattcttttgtcaagtag 60  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32649670 aaaattatgttccc-tgtttgattgacattcagttcattcttttgtcaagtag 32649619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 559
Target Start/End: Complemental strand, 32225625 - 32225581
Alignment:
Q  515 aactatatatgatacgtgcggcagcacgggtggacgatctagttt 559  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||    
T  32225625 aactatatatgacccgtgcggcagcaccggtggacgatctagttt 32225581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 557
Target Start/End: Complemental strand, 23976745 - 23976706
Alignment:
Q  518 tatatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  23976745 tatatatgacccgtgcggcagcacgggtggacgatctagt 23976706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 558
Target Start/End: Complemental strand, 44376116 - 44376078
Alignment:
Q  520 tatatgatacgtgcggcagcacgggtggacgatctagtt 558  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  44376116 tatatgacccgtgcggcagcacgggtggacgatctagtt 44376078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 17558865 - 17558824
Alignment:
Q  517 ctatatatgatacgtgcggcagcacgggtggacgatctagtt 558  Q
    ||||||||||  ||||||||||||||||| ||||||||||||    
T  17558865 ctatatatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 388 - 557
Target Start/End: Complemental strand, 22136449 - 22136279
Alignment:
Q  388 tttagtgaaacaacaaaacacactacgttacatc----gtatatcacgagaccacacataagtctgtaacaacagacatattctctgtgaaaagttcatt 483  Q
    ||||||| |||| ||||||||||||||||||||     ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||   |    
T  22136449 tttagtggaacagcaaaacacactacgttacatttgtagtatatcacgagaccacacataagtttgtaacaacagacatattctctgcgacaagtt---t 22136353  T
Q  484 catactaaaatatatttcaaataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    ||||||| |||||||||| | ||||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  22136352 catactacaatatatttcgagtaatgtcttaaactatatatgacccgtgcggcaacacgggtggacgatctagt 22136279  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 613
Target Start/End: Complemental strand, 32073910 - 32073854
Alignment:
Q  557 tttatttattgcagactagcgacaatagtttgacactctttcatacctatcaaaagt 613  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  32073910 tttatttattgcagactagtgacaatagtttgtcgctctttcatacctatcaaaagt 32073854  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 643 - 676
Target Start/End: Complemental strand, 32073855 - 32073822
Alignment:
Q  643 gtaactagagaatgcttatagctacctaattatg 676  Q
    ||||||||||||||||||||||||||||| ||||    
T  32073855 gtaactagagaatgcttatagctacctaagtatg 32073822  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 503 - 559
Target Start/End: Complemental strand, 16349769 - 16349713
Alignment:
Q  503 aataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagttt 559  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||||||||||||    
T  16349769 aataatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagttt 16349713  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 503 - 557
Target Start/End: Original strand, 4082574 - 4082628
Alignment:
Q  503 aataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||||||||||    
T  4082574 aataatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagt 4082628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 520 - 558
Target Start/End: Complemental strand, 30096313 - 30096275
Alignment:
Q  520 tatatgatacgtgcggcagcacgggtggacgatctagtt 558  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  30096313 tatatgatccgtgcggcagcacgggtggacgatctagtt 30096275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 557
Target Start/End: Original strand, 16222687 - 16222745
Alignment:
Q  499 ttcaaataatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    ||||| |||||| || | |||||||||| | |||||||||||||||| |||||||||||    
T  16222687 ttcaactaatgtttttagctatatatgacatgtgcggcagcacgggtagacgatctagt 16222745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 557
Target Start/End: Original strand, 40951482 - 40951524
Alignment:
Q  515 aactatatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  40951482 aactatatatgacccgtgcggcagcacgggtagacgatctagt 40951524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 25099273 - 25099236
Alignment:
Q  520 tatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    |||||||  |||||||||||||||||||||||||||||    
T  25099273 tatatgacccgtgcggcagcacgggtggacgatctagt 25099236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 25158363 - 25158326
Alignment:
Q  520 tatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    |||||||  |||||||||||||||||||||||||||||    
T  25158363 tatatgacccgtgcggcagcacgggtggacgatctagt 25158326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 505 - 559
Target Start/End: Original strand, 16367864 - 16367918
Alignment:
Q  505 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagttt 559  Q
    |||||| |||||||||||||||  ||||||||||||||||| |||||||||||||    
T  16367864 taatgttttaaactatatatgacccgtgcggcagcacgggtagacgatctagttt 16367918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 557
Target Start/End: Complemental strand, 42308175 - 42308123
Alignment:
Q  505 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    |||||| || ||||||||||||  ||||||||||||| |||||||||||||||    
T  42308175 taatgtttttaactatatatgacccgtgcggcagcacaggtggacgatctagt 42308123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 558
Target Start/End: Complemental strand, 405391 - 405353
Alignment:
Q  520 tatatgatacgtgcggcagcacgggtggacgatctagtt 558  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  405391 tatatgacccgtgcggcagcacgggtggacgatctagtt 405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 513 - 559
Target Start/End: Original strand, 771642 - 771688
Alignment:
Q  513 taaactatatatgatacgtgcggcagcacgggtggacgatctagttt 559  Q
    ||||||||||||||  ||||||||||||||||| ||||| |||||||    
T  771642 taaactatatatgacccgtgcggcagcacgggtagacgacctagttt 771688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 529 - 557
Target Start/End: Original strand, 17695634 - 17695662
Alignment:
Q  529 cgtgcggcagcacgggtggacgatctagt 557  Q
    |||||||||||||||||||||||||||||    
T  17695634 cgtgcggcagcacgggtggacgatctagt 17695662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 560
Target Start/End: Complemental strand, 28947491 - 28947451
Alignment:
Q  520 tatatgatacgtgcggcagcacgggtggacgatctagttta 560  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  28947491 tatatgacccgtgcggcagcacgggtggacgatctagttta 28947451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 563
Target Start/End: Complemental strand, 27840359 - 27840301
Alignment:
Q  505 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagtttattt 563  Q
    |||||| |||||||||| ||||  |||||| |||||||||| |||||||||||| ||||    
T  27840359 taatgttttaaactataaatgacccgtgcgacagcacgggtagacgatctagttcattt 27840301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 557
Target Start/End: Complemental strand, 51387171 - 51387129
Alignment:
Q  515 aactatatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  51387171 aactatatatgacccgtgcggcagcacgggtagacgatctagt 51387129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 562
Target Start/End: Original strand, 47250304 - 47250361
Alignment:
Q  505 taatgtcttaaactatatatgatacgtgcggcagcacgggtggacgatctagtttatt 562  Q
    |||||| || ||||||||||||  ||||||||||| ||| ||||||||||||| ||||    
T  47250304 taatgtttttaactatatatgacccgtgcggcagctcggatggacgatctagtatatt 47250361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 513 - 557
Target Start/End: Original strand, 50293655 - 50293699
Alignment:
Q  513 taaactatatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    ||||||||||||||  |||||||||||| |||| |||||||||||    
T  50293655 taaactatatatgacccgtgcggcagcatgggtagacgatctagt 50293699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 559
Target Start/End: Original strand, 31097904 - 31097943
Alignment:
Q  520 tatatgatacgtgcggcagcacgggtggacgatctagttt 559  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  31097904 tatatgacccgtgcggcagcacgggtggacgatctagttt 31097943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Original strand, 1109 - 1146
Alignment:
Q  520 tatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    |||||||  |||||||||||||||||||||||||||||    
T  1109 tatatgacccgtgcggcagcacgggtggacgatctagt 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 8657101 - 8657064
Alignment:
Q  520 tatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    |||||||  |||||||||||||||||||||||||||||    
T  8657101 tatatgacccgtgcggcagcacgggtggacgatctagt 8657064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 33289107 - 33289070
Alignment:
Q  520 tatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    |||||||  |||||||||||||||||||||||||||||    
T  33289107 tatatgacccgtgcggcagcacgggtggacgatctagt 33289070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 53693213 - 53693258
Alignment:
Q  512 ttaaactatatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    |||||||||||||||   |||||||||||||||| |||||||||||    
T  53693213 ttaaactatatatgacctgtgcggcagcacgggtagacgatctagt 53693258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 513 - 557
Target Start/End: Complemental strand, 44708271 - 44708227
Alignment:
Q  513 taaactatatatgatacgtgcggcagcacgggtggacgatctagt 557  Q
    |||| |||||||||  ||||||||||||||||| |||||||||||    
T  44708271 taaattatatatgacccgtgcggcagcacgggtagacgatctagt 44708227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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