View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277A-Insertion-9 (Length: 414)
Name: NF1277A-Insertion-9
Description: NF1277A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277A-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Original strand, 48799093 - 48799505
Alignment:
| Q |
8 |
ataggttcatataactttctgaatctatgatgcatctaaaaaagtaaattagaaacttccaagtgagtgcaagtttcaacgcgctgaaaccgtaacgaac |
107 |
Q |
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| T |
48799093 |
ataggttcatataactttctgaatctatgatgcatctaaaaaagtaaattagaaacttccaagtgagtgcaagtttcaacgcgctgaaaccgtaacgaac |
48799192 |
T |
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| Q |
108 |
tttattatgttttgactttgatactccttactcatcttaacctctcttatcactcag--------------------agaattgcaaaagaataacaaca |
187 |
Q |
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| T |
48799193 |
tttattatgttttgactttgatactccttactcatcttaacctctcttatcactcaggttaggtagttgttataagcagaattgcaaaagaataacaaca |
48799292 |
T |
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| Q |
188 |
atattcttgtactttgattttgtagaactttggactcacaagtccactgcctacagttgccttggccgtaacaggactggtgggtgtcttgacagcagtt |
287 |
Q |
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| T |
48799293 |
atattcttgtactttgattttgtagaactttggactcacaagtccactgcctacagttgccttggccgtaacaggactggtgggtgtcttgacagcagtt |
48799392 |
T |
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| Q |
288 |
ttcatcttccagtcagcctcagagaactgattaaattaggctggttgtgtttgatgtaaattctgtagtttcaaatggagtttcatttcttcaagcaaca |
387 |
Q |
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| T |
48799393 |
ttcatcttccagtcagcctcagagaactgattaaattaggctggttgtgtttgatgtaaattctgtagtttcaaatggagtttcattttttcaagcaaca |
48799492 |
T |
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| Q |
388 |
ttttatcacaatt |
400 |
Q |
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| T |
48799493 |
ttttatcacaatt |
48799505 |
T |
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Back To:
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 1802122 - 1802162
Alignment:
| Q |
335 |
tgtttgatgtaaattctgtagtttcaaatggagtttcattt |
375 |
Q |
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| T |
1802122 |
tgtttgttgtaaattctgtggtttcaaatggggtttcattt |
1802162 |
T |
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