View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277D-Insertion-1 (Length: 856)
Name: NF1277D-Insertion-1
Description: NF1277D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277D-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 237 - 706
Target Start/End: Complemental strand, 29878260 - 29877786
Alignment:
| Q |
237 |
gttgataatgtgttatcaattcttttattaaatgacttatttttggatgaaatatgtgttatttcatatgaaaacaatgtttttctagtaagacatcaag |
336 |
Q |
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| T |
29878260 |
gttgataatgtgttatcaattcttttattaaatgacttatttttggatgaaatgtgtg--atttcatatgaaaacaatgtttttctagtaagacatcaag |
29878163 |
T |
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| Q |
337 |
aaatttattttctgtacataagatcgaaatagaaaccacacaaaaataaaccaacatttttcttttttgagag--------aaccaacatcattaggnnn |
428 |
Q |
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| T |
29878162 |
aaatttattttctgtacataagatcgaaatagaaaccacacaaaa-taaaccaacattttt--tttttgagagggtcactaaaccaacatcattaggttt |
29878066 |
T |
|
| Q |
429 |
nnnnnnnnnnn--gaaagaacatctaggctatttagtgactaactttcgattnnnnnnntgtaacttattaaacaacttcaacatagaaggtttagttac |
526 |
Q |
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| T |
29878065 |
tttttttttttttgaaagaacatctaggttatttagtgactaactttcgattaaaaaaatgtaacttattaaacaacttcaacatagaaggtttagttac |
29877966 |
T |
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| Q |
527 |
ttgttacttgaaatatggaactttcaagatttcatttcaagaagataagatatgttgctatcatataagcccgggatcctaatttgataacttcatgaca |
626 |
Q |
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| T |
29877965 |
ttgttacttgaaatatggaactttcaagatttcatttcaagaagataagatatgttgctatcatataagcccggcatcctgatttgataacttcatgaca |
29877866 |
T |
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| Q |
627 |
aggacaaatttggtccctcacatacccacatttgctgtcaatccaaatgttgaaaatgaacatttggatttaatttgttt |
706 |
Q |
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| T |
29877865 |
aggacaaatttggtccctcacatacccacatttgctgtaaatccaaatgttgaaaatgaacatttggatttaatttgttt |
29877786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 29878495 - 29878337
Alignment:
| Q |
7 |
acaaaagaagggtatagtgttgtgtgacttgtgtggttaatgtgagaatcgttttagttatttgatttttaatgtaaacataacaggcttaaataattat |
106 |
Q |
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| T |
29878495 |
acaaaagaagggtatagtgttgtgtgacttgtgtggttaatgtgagaatcgttttagttatttgatttttaatgtaaacataacaggcttaaataattat |
29878396 |
T |
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| Q |
107 |
ctccaactttaatcc----tttcttttttataataactttaatccttgttattttctct |
161 |
Q |
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| T |
29878395 |
ctccaactttaatccttttttttttttttataataactttaatccttgttattttctct |
29878337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 745 - 856
Target Start/End: Complemental strand, 29877782 - 29877672
Alignment:
| Q |
745 |
aaaaggataatgtcacccaatacattcatataatcaaccgtcatttgtacatacaacactatgtacccataaaatgtaaaaaatagaaatccccttcact |
844 |
Q |
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| T |
29877782 |
aaaaggataatgtcacccaatacattcatataatcaaccatcatttgtacatacaacactatgtacccataaaatgtaaaaaa-agaaatccccttcact |
29877684 |
T |
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| Q |
845 |
tggtgtggtgtg |
856 |
Q |
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|||||||||||| |
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| T |
29877683 |
tggtgtggtgtg |
29877672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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