View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1277D-Insertion-4 (Length: 803)

Name: NF1277D-Insertion-4
Description: NF1277D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1277D-Insertion-4
NF1277D-Insertion-4
[»] chr1 (4 HSPs)
chr1 (488-803)||(37803145-37803444)
chr1 (42-207)||(37803666-37803833)
chr1 (343-428)||(37803513-37803598)
chr1 (237-313)||(37803596-37803672)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 488 - 803
Target Start/End: Complemental strand, 37803444 - 37803145
Alignment:
Q  488 atcagcagcatgtagtagccgcagcaatgaactcaactgcccgggaaacacagccggagtccgtcgtcgaccgccgtcacaaacagtgaaaaacccatcc 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  37803444 atcagcagcatgtagtagccgcagcaatgaactcaactgcccgggaaacacagccggagtccgtcgtcgaccgccgtcagaaacagtgaaaaactcatcc 37803345  T
Q  588 aattattctccgacgcgattccaccgtaccagataattcgtgtcgcagcagatacccatcccccaatttggcgctaaagcggcgaaattcacaacctagg 687  Q
    |||||||||||||||||||||||||||||||||||||               ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37803344 aattattctccgacgcgattccaccgtaccagataat---------------tacccatcccccattttggcgctaaagcggcgaaattcacaacctagg 37803260  T
Q  688 ttagggttaacgatannnnnnngttttaattttccattaaattccctaaagttttgaaatttatgctatcctttactaacccattatcttcttattcata 787  Q
    |||||||||||||||       ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37803259 ttagggttaacgata-ttttttgttttaattttccattaaaatccctaaatttttgaaatttatgctatcctttacgaacccattatcttcttattcata 37803161  T

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Target: chr1; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 37803833 - 37803666
Alignment:
Q  42 atttcctttattattcagtatcagtttatactgaatcaaaaactacccaaaaattcaataaacactaacatttgaccaaattttgaag--nnnnnnnttg 139  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  37803833 atttcctttattattcagtatcagtttatactgaatcacaaactacccaaaaattcaataaacactaacatttgaccaaattttgaagaaaaaaaaattg 37803734  T
Q  140 ttatattattgataacttgtttgcctctgaagaaacaaattggatggagatttgtttgagtgagtttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37803733 ttatattattgataacttgtttgcctctgaagaaacaaattggatggagatttgtttgagtgagtttg 37803666  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 37803598 - 37803513
Alignment:
Q  343 cgtcgaaagtaatttccttttcaaataacaaatgggattctgctccaaagcccaatcgatttcgttttgaaaggcccatcactcac 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37803598 cgtcgaaagtaatttccttttcaaataacaaatgggattctgctccaaagcccaatcgatttcgttttgaaaggcccatcactcac 37803513  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 37803672 - 37803596
Alignment:
Q  237 gagtttgtgtaaaagtgcgagttgctgctctagaataagaccagagagaaacgaaagttaacgatattaactatcgt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  37803672 gagtttgtgtaaaagtgcgagttgctgctctagaataagaccagagagaaatgaaagttaacgacattaactatcgt 37803596  T

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