View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1277D-Insertion-5 (Length: 762)

Name: NF1277D-Insertion-5
Description: NF1277D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1277D-Insertion-5
NF1277D-Insertion-5
[»] chr6 (11 HSPs)
chr6 (113-762)||(1196996-1197657)
chr6 (171-360)||(1186577-1186764)
chr6 (8-113)||(1196749-1196854)
chr6 (414-615)||(1187076-1187274)
chr6 (414-600)||(1181854-1182037)
chr6 (414-600)||(1192778-1192965)
chr6 (8-64)||(1180407-1180463)
chr6 (186-274)||(1192334-1192419)
chr6 (415-600)||(896656-896844)
chr6 (659-731)||(1187307-1187379)
chr6 (37-70)||(1185801-1185834)
[»] chr8 (11 HSPs)
chr8 (537-614)||(5207118-5207195)
chr8 (508-605)||(5171557-5171654)
chr8 (508-614)||(5195091-5195197)
chr8 (508-614)||(1795806-1795912)
chr8 (508-614)||(5198889-5198995)
chr8 (508-614)||(5185097-5185203)
chr8 (508-614)||(6231607-6231713)
chr8 (508-614)||(5177655-5177761)
chr8 (187-297)||(5175539-5175649)
chr8 (185-297)||(5204690-5204802)
chr8 (187-278)||(5194408-5194499)
[»] chr7 (3 HSPs)
chr7 (507-608)||(8306727-8306828)
chr7 (508-615)||(5178789-5178896)
chr7 (413-608)||(8551765-8551957)
[»] chr4 (2 HSPs)
chr4 (414-600)||(10203253-10203439)
chr4 (406-611)||(49611764-49611969)
[»] chr5 (1 HSPs)
chr5 (541-610)||(14878112-14878180)


Alignment Details
Target: chr6 (Bit Score: 492; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 113 - 762
Target Start/End: Original strand, 1196996 - 1197657
Alignment:
Q  113 aaagaatatttgttctcgtctcatgtaaatatcttacttgcaagctgt---cctgcaactatt-ctttttcgtgcgccaaagcattcattaaggtatgtc 208  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  1196996 aaagaatatttgttctcgtctcatgtaattatcttacttgcaagctgttgtcctgcaactatttctttttcatgcgccaaagcattcattaaggtatgtc 1197095  T
Q  209 attgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataacatattgtgattgtcctatatgacagaagagggaaaggaa 308  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  1197096 attgtcttccatgctccttaaattttaagtcgtgctttaagcaatgaaattctttcatgacatattgtgattgtcctatatgacagaagggggaaaggaa 1197195  T
Q  309 acttgtcttgccatgttttccttttttgtcgaacatgttgcatttatgcttagaatgtttatacttttattaatatgaatgnnnnnnnnagaggttttca 408  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  1197196 acttgtcttgccatgttttccttttttgtcaaacatgttacatttatgcttagaatgtttatacttttattaatatgaatgttttttttagaggttttca 1197295  T
Q  409 atataaatgttat-----gtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnnga 503  Q
    |||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |    
T  1197296 atataaatgttatgtgtagtgtagcttttgacttctaactctattttgttaatcgtcgataactacagtttttctatgagacgttaatgagaaaaaaaaa 1197395  T
Q  504 gagcgactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgat 603  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1197396 gaacgactgcttttgcagttctgatgatacaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgat 1197495  T
Q  604 tttaag--accattatggaatcgttggaagcttgtgtacaaatttttgtacctcaagaaagtataagcttgaggctggaattttaatgttgttgtgatca 701  Q
    ||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1197496 tttaagacaccgttatggaatcgttggaagcttgtgtacaaatttttgtacctcaagaaagtataagcttgaggctggaattttaatgttgttgtgatca 1197595  T
Q  702 atagaaagatagacaggcttacttagaagtcttattacc-ctttaaataatgcttttaattt 762  Q
    |||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  1197596 atagaaagatggacaggcttacttagaagtcttattacctcttaaaatgatgcttttaattt 1197657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 171 - 360
Target Start/End: Original strand, 1186577 - 1186764
Alignment:
Q  171 ttctttttcgtgcgccaaagcattcattaaggtatgtcattgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataaca 270  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||| |||||     
T  1186577 ttctttttcgtacgccaaagcattcattgaggtatgtcattgtcttccatgctctttcaattttaagtcgtgctttgagcaattaaattctttaataact 1186676  T
Q  271 tattgtgattgtcctatatgacagaagagggaaaggaaacttgtcttgccatgttttccttttttgtcgaacatgttgcatttatgctta 360  Q
    |||||||||||||||||||||||||  ||| |||  ||||||||||||||||||| ||||||| |||| || | ||||||||||||||||    
T  1186677 tattgtgattgtcctatatgacaga--aggaaaacaaaacttgtcttgccatgttctccttttatgtcaaaaacgttgcatttatgctta 1186764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 1196749 - 1196854
Alignment:
Q  8 gatatttggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaatgggttaatcaagaccaatactattatcatgcgttgccaaggt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1196749 gatatttggttgaaattggcttgtgaatgtggtgttgaggtaatagagtattcccaatgggttaatcaagaccaatactattatcatgcgttgccaaggt 1196848  T
Q  108 gggtca 113  Q
    | ||||    
T  1196849 gtgtca 1196854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 414 - 615
Target Start/End: Original strand, 1187076 - 1187274
Alignment:
Q  414 aatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgc 513  Q
    |||||| |||||||||| |||||||||||||||||||||| ||| || | |||| || ||||||||||||||| |||||||       |   |||| |||    
T  1187076 aatgttttgtgtagcttatgacttctaactctattttgtttatcatctaaaactacaatttttctatgagacgctaatgagaaaaaaag---gcgattgc 1187172  T
Q  514 ttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgattttaagacca 613  Q
    ||||||| ||||  | || | |||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||||  |||||||||||    
T  1187173 ttttgcatttcttctaatacgaagtgttggtggcatggcttgaaggatgtgaaagtcacaagctctatgaagattgatgagaatgtttgttttaagacca 1187272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 414 - 600
Target Start/End: Original strand, 1181854 - 1182037
Alignment:
Q  414 aatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgc 513  Q
    |||||||| ||| |||| ||| |||| ||||||||||||| ||| || | |||||||| |||||||||||||| |||||||       ||   ||| |||    
T  1181854 aatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactgcagattttctatgagacgctaatgagaaaaaaaga---cgattgc 1181950  T
Q  514 ttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgtt 600  Q
    ||||||| ||||| |||    |||||||||||||||||||||||||||||||||||||  ||| ||| |||||| ||||||||||||    
T  1181951 ttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 1182037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 414 - 600
Target Start/End: Original strand, 1192778 - 1192965
Alignment:
Q  414 aatgttatgtgtagcttttgacttctaactctatttt-gttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactg 512  Q
    |||||||||||| |||| ||| ||||||||||||||| ||| ||| || | |||| |||||||| ||||||||| ||||| |       |||| | | ||    
T  1192778 aatgttatgtgtggcttgtgagttctaactctatttttgtttatcatctaaaactacagtttttgtatgagacgctaatgggaaaaaaagagaacaattg 1192877  T
Q  513 cttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgtt 600  Q
    |||||||| ||||| |||  | |||||||||||||||| ||||||||||||||||||||  ||| ||| |||||| ||||||||||||    
T  1192878 cttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 1192965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 1180407 - 1180463
Alignment:
Q  8 gatatttggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaa 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1180407 gataattggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaa 1180463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 1192334 - 1192419
Alignment:
Q  186 caaagcattcattaaggtatgtcattgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataacatatt 274  Q
    |||| |||||||| |||||||||||||||| ||||||||   || |||||||| |||||||||||||||||||||||| ||||||||||    
T  1192334 caaaccattcattgaggtatgtcattgtctcccatgctc---aaattttaagttgtgctttgagcaatgaaattctttaataacatatt 1192419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 415 - 600
Target Start/End: Original strand, 896656 - 896844
Alignment:
Q  415 atgttatgtgtagcttttgacttcta--actctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactg 512  Q
    |||||||||||||||| ||| || ||  ||||||||||||| ||| || | |||| |||||||||||||||||| ||||| |        ||| ||| ||    
T  896656 atgttatgtgtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggaaaaaa--agaacgattg 896753  T
Q  513 cttttgcag---ttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgtt 600  Q
    |||||||||   ||||| |||  | |||||||||||||||| ||||||||||||||||||||  ||| ||| | |||| ||||||||||||    
T  896754 cttttgcagcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaatgtt 896844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 659 - 731
Target Start/End: Original strand, 1187307 - 1187379
Alignment:
Q  659 aaagtataagcttgaggctggaattttaatgttgttgtgatcaatagaaagatagacaggcttacttagaagt 731  Q
    ||| ||| ||||| || || |||||||||| ||| ||||||||||||| ||||||||| ||||||||| ||||    
T  1187307 aaaatattagctttagactagaattttaattttgctgtgatcaatagatagatagacatgcttacttaaaagt 1187379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 1185801 - 1185834
Alignment:
Q  37 tggtgttgaggtaatacagtattcccaatgggtt 70  Q
    |||||||||||||||| |||||||||||||||||    
T  1185801 tggtgttgaggtaatagagtattcccaatgggtt 1185834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 537 - 614
Target Start/End: Original strand, 5207118 - 5207195
Alignment:
Q  537 gtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgattttaagaccat 614  Q
    |||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  5207118 gtgttggtggcatggcttgaaggatgtaaaagtcacgagctctatgaagattgatgagaatgttgatttcaagaccat 5207195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 508 - 605
Target Start/End: Original strand, 5171557 - 5171654
Alignment:
Q  508 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgattt 605  Q
    ||||||||||||| ||||  |||| | |||||||||||||||| |||||||||||||||||| || ||| |||||||||| || ||||||||||||||    
T  5171557 gactgcttttgcatttcttgtgataccaagtgttggtggcatggcttgaaggatgtgaaagttacaagctctatgaagattgacgagaatgttgattt 5171654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 508 - 614
Target Start/End: Original strand, 5195091 - 5195197
Alignment:
Q  508 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgatttta 607  Q
    ||||||||||||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||  ||| |  ||||||| ||||||||| ||||||| |    
T  5195091 gactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttca 5195190  T
Q  608 agaccat 614  Q
    |||||||    
T  5195191 agaccat 5195197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 508 - 614
Target Start/End: Complemental strand, 1795912 - 1795806
Alignment:
Q  508 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgatttta 607  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||  ||| |  ||||||| ||||||||| ||||||| |    
T  1795912 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttca 1795813  T
Q  608 agaccat 614  Q
    |||||||    
T  1795812 agaccat 1795806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 508 - 614
Target Start/End: Complemental strand, 5198995 - 5198889
Alignment:
Q  508 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgatttta 607  Q
    ||||||||||||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||  ||| |  ||||||| ||||| ||| ||||||| |    
T  5198995 gactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgataatattgatttca 5198896  T
Q  608 agaccat 614  Q
    |||||||    
T  5198895 agaccat 5198889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 508 - 614
Target Start/End: Original strand, 5185097 - 5185203
Alignment:
Q  508 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgatttta 607  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||  ||| | |||||||| ||||| ||| |||| || |    
T  5185097 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatgataatattgacttca 5185196  T
Q  608 agaccat 614  Q
    |||||||    
T  5185197 agaccat 5185203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 508 - 614
Target Start/End: Original strand, 6231607 - 6231713
Alignment:
Q  508 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgatttta 607  Q
    ||||||||||||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||  ||| |  ||||||  ||| ||||| ||||||| |    
T  6231607 gactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcattgaagaatgataagaatattgatttca 6231706  T
Q  608 agaccat 614  Q
    |||||||    
T  6231707 agaccat 6231713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 614
Target Start/End: Original strand, 5177655 - 5177761
Alignment:
Q  508 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgatttta 607  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||  ||| |  ||||||| ||||| ||| |||| || |    
T  5177655 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgataatattgacttca 5177754  T
Q  608 agaccat 614  Q
    |||||||    
T  5177755 agaccat 5177761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 5175539 - 5175649
Alignment:
Q  187 aaagcattcattaaggtatgtcattgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataacatattgtgattgtccta 286  Q
    |||||||||||| |||||||||||| |||    || ||||| | ||| |||| ||||||  |||| |||||||||| ||||  ||||||||||||| |||    
T  5175539 aaagcattcattcaggtatgtcattctctattgtgttcctttaatttcaagttgtgcttcaagcagtgaaattcttacatattatattgtgattgtacta 5175638  T
Q  287 tatgacagaag 297  Q
    ||| |||||||    
T  5175639 tataacagaag 5175649  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 5204690 - 5204802
Alignment:
Q  185 ccaaagcattcattaaggtatgtcattgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataacatattgtgattgtcc 284  Q
    |||||||||||||  |||||||||||| ||| ||||| || || | ||| |||| ||||||| |||  |||||  ||| ||||  ||||||||||||| |    
T  5204690 ccaaagcattcatagaggtatgtcattctctcccatgttcttttaatttcaagttgtgctttcagccgtgaaacccttacatattatattgtgattgtac 5204789  T
Q  285 tatatgacagaag 297  Q
    || ||||||||||    
T  5204790 tacatgacagaag 5204802  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 5194408 - 5194499
Alignment:
Q  187 aaagcattcattaaggtatgtcattgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataacatattgtga 278  Q
    ||||| |||||| |||||||||||| ||| ||||| ||||| | ||| |||| ||||||  |||| |||||||||| ||||  |||||||||    
T  5194408 aaagcgttcattgaggtatgtcattctctcccatgttcctttaatttcaagttgtgcttccagcagtgaaattcttacatattatattgtga 5194499  T

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Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 507 - 608
Target Start/End: Original strand, 8306727 - 8306828
Alignment:
Q  507 cgactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgatttt 606  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||| ||||||||||  || | ||||| || ||||||||||||||||||    
T  8306727 cgactgcttttgcagctctaatgatacaaagtgttggtggcatggcttgaaggatttgaaagtcacacgctcaatgaaaattgatgagaatgttgatttt 8306826  T
Q  607 aa 608  Q
    ||    
T  8306827 aa 8306828  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 508 - 615
Target Start/End: Original strand, 5178789 - 5178896
Alignment:
Q  508 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgatttta 607  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||  ||| | |||||||| ||||| ||| ||||||| |    
T  5178789 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatgataatattgatttca 5178888  T
Q  608 agaccatt 615  Q
    ||||||||    
T  5178889 agaccatt 5178896  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 413 - 608
Target Start/End: Complemental strand, 8551957 - 8551765
Alignment:
Q  413 aaatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactg 512  Q
    |||||||||||| ||||| ||| || |||| ||||||| ||||| ||| | |||| |||||||||||||||||  | |||||       ||   ||||||    
T  8551957 aaatgttatgtggagcttctgagttataacgctattttattaattgtccaaaactacagtttttctatgagactctgatgagaagaaaaga---cgactg 8551861  T
Q  513 cttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgattttaa 608  Q
    ||||||||| |||  |||| | || ||||||||||||| ||||||| || |||||||| |   | | ||||| || ||||||||||||||||||||    
T  8551860 cttttgcagctctagtgataccaattgttggtggcatggcttgaagaatttgaaagtcgcacactcaatgaaaattgatgagaatgttgattttaa 8551765  T

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Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 414 - 600
Target Start/End: Original strand, 10203253 - 10203439
Alignment:
Q  414 aatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgc 513  Q
    |||||| | ||| |||| ||| |||||||||||||||||| ||| || | |||| |||||||| ||||||||| ||||| |       |||| ||| |||    
T  10203253 aatgttttctgtggcttgtgagttctaactctattttgtttatcatctaaaactacagtttttttatgagacgctaatgggaaaaaaagagaacgattgc 10203352  T
Q  514 ttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgtt 600  Q
    ||||||| ||||  |||  | |||||||||||||||| ||||||||||||||||||||  ||| ||| |||||| ||||||||||||    
T  10203353 ttttgcatttctactgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 10203439  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 406 - 611
Target Start/End: Original strand, 49611764 - 49611969
Alignment:
Q  406 tcaatataaatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngaga 505  Q
    ||||||||||| || |||| ||||| ||| || ||||| |||||||||||| ||| | |||| ||||||||||| |||||  |||||||       ||      
T  49611764 tcaatataaattttttgtggagcttctgagttataactatattttgttaattgtccaaaactacagtttttctacgagacactaatgagaagaaaagacg 49611863  T
Q  506 gcgactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgattt 605  Q
     ||| ||| ||||| |||||  |||| | |||||||||||||||| |||||||||| |||||||| | |   | | ||| || |||||||||||||||||    
T  49611864 acgattgcgtttgcggttctagtgataccaagtgttggtggcatggcttgaaggatttgaaagtctcaacttcaaagaaaattgatgagaatgttgattt 49611963  T
Q  606 taagac 611  Q
    ||||||    
T  49611964 taagac 49611969  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 610
Target Start/End: Complemental strand, 14878180 - 14878112
Alignment:
Q  541 tggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgattttaaga 610  Q
    |||||||||| |||||||||||| |||||||| ||| ||||||| || ||| ||||| ||||||||||||    
T  14878180 tggtggcatggcttgaaggatgtaaaagtcactagcgctatgaatattgataagaat-ttgattttaaga 14878112  T

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