View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1277D-Insertion-6 (Length: 549)
Name: NF1277D-Insertion-6
Description: NF1277D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277D-Insertion-6 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
| [»] chr3 (6 HSPs) |
| |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
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| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
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| [»] scaffold0511 (1 HSPs) |
| | |
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| [»] scaffold0042 (3 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 522; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 549
Target Start/End: Original strand, 19053034 - 19053575
Alignment:
| Q |
8 |
ttagaagctgacagaaagtgattatggaggattagggcaagggcagaagtggataaattgtaattaggctgctgattgggatacaagctaggaataaact |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19053034 |
ttagaagctgacagaaagtgattatggaggattagggcaagggcagaagtggataaattgtaattaggctgctgattgggatacaagctaggaataagct |
19053133 |
T |
|
| Q |
108 |
gtttttggaagaagtttggtgaaacccgtatttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19053134 |
gtttttggaagaagtttggtgaaacccgtatttgggacagggctccactaaatcggtaagaactcactccctgtaacttggaatcaagtgatttttgatg |
19053233 |
T |
|
| Q |
208 |
ctatggttagctaacgaaattccggacgttttggtaccagtttcattgattttggtccagatttgaagtctgtagacgatgttgaagttgggggcagaag |
307 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19053234 |
ctatggttagctaacgaaattctggacgttttggtaccagtttcattgattttggtccagatttgaagtctgtagacgattttgaagttgggggcagaag |
19053333 |
T |
|
| Q |
308 |
taggattttgtgctgaaccatgaatataagttgttttgatgtgctaaagtttggtatcacttagcaataggtatttttaagttgctaaggaacaactatg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19053334 |
taggattttgtgctgaaccatgaatataagttgttttgatgtgctaaagtttggtatcacttaacaataggtatttttaagttgctaaggaacaactatg |
19053433 |
T |
|
| Q |
408 |
aatataagttgttttgaagtttggtatcacttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtata |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19053434 |
aatataagttgttttgaagtttggtatcacttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtata |
19053533 |
T |
|
| Q |
508 |
ttaagattttttaagctactatgttgcagttttagagaccta |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19053534 |
ttaagattttttaagctactatgttgcagttttagagaccta |
19053575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 32 - 344
Target Start/End: Original strand, 25717780 - 25718092
Alignment:
| Q |
32 |
tggaggattagggcaagggcagaagtggataaattgtaattaggctgctgattgggatacaagctaggaataaactgtttttggaagaagtttggtgaaa |
131 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25717780 |
tggaggattagggcaagggcagatgtggataaattgtaattaggctgctgattgggatacaagctaggaataagctgtttttggaagaagtttggtgaag |
25717879 |
T |
|
| Q |
132 |
cccgtatttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccg |
231 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25717880 |
cccgtatttgggacagagctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccg |
25717979 |
T |
|
| Q |
232 |
gacgttttggtaccagtttcattgattttggtccagatttgaagtctgtagacgatgttgaagttgggggcagaagtaggattttgtgctgaaccatgaa |
331 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25717980 |
gacgttttcgtaccagtttcattgtttttggtccagatttgaagtctgtagacgattttgaagttgggggcagaagtaggattttgtgctgaaccatgaa |
25718079 |
T |
|
| Q |
332 |
tataagttgtttt |
344 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25718080 |
tataagttgtttt |
25718092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 138 - 360
Target Start/End: Original strand, 17146576 - 17146798
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||| ||| |||| |||||||||||||||||||| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
17146576 |
tttgggacaggatttcactaaaaccgtaagaactttctcaatgtagcttggaatcaagtgatttttaatgctacggttagataacgaaattccggacgtt |
17146675 |
T |
|
| Q |
238 |
ttggtaccagtttcattgattttggtccagatttgaagtctgtagacgatgttgaagttgggggcagaagtaggattttgtgctgaaccatgaatataag |
337 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17146676 |
ttggtaccagtttcactgattttggtccagtattgaactctgtagacgattttgaatttgggggcagaagtaggattttgtgctgaaccatgaatatgag |
17146775 |
T |
|
| Q |
338 |
ttgttttgatgtgctaaagtttg |
360 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
17146776 |
ttgttttgatgtgctaaagtttg |
17146798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 438 - 546
Target Start/End: Complemental strand, 42301425 - 42301317
Alignment:
| Q |
438 |
ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcc-tagcatgatgtatattaagattttttaagctactatgttgcag |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
42301425 |
ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatccttaggatgatgtatgttaaga-tttttaagctaccatgttgcag |
42301327 |
T |
|
| Q |
537 |
ttttagagac |
546 |
Q |
| |
|
|||||||||| |
|
|
| T |
42301326 |
ttttagagac |
42301317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 15560925 - 15561027
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||| ||||||| |||||| | | || ||| |||||||||| ||||||||||| | |||||| |
|
|
| T |
15560925 |
tttgggacagggcttcactaaaatggtaagaactctctctgtgtaactctgaatcaggaggttattgtcgctatggttacctaacgaaatttccgacgtt |
15561024 |
T |
|
| Q |
238 |
ttg |
240 |
Q |
| |
|
||| |
|
|
| T |
15561025 |
ttg |
15561027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 344
Target Start/End: Original strand, 29684785 - 29685109
Alignment:
| Q |
20 |
agaaagtgattatggaggattagggcaagggcagaagtggataaattgtaattaggctgctgattgggatacaagctaggaataaactgtttttggaaga |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
29684785 |
agaaagtgattatagaggattagggcaagggcagaagtggataaattgtaattaggctgctgattcagatacaagctaggaataagctgtttttggaaga |
29684884 |
T |
|
| Q |
120 |
agtttggtgaaacccgtatttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagct |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29684885 |
agtttggtgaaaaacgtatttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagat |
29684984 |
T |
|
| Q |
220 |
aacgaaattccggacgttttggtaccagtttcattgattttggtccagatttgaagtctgtagacgatgttgaagttgggggcagaagtaggattttgtg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29684985 |
aacgaaattccggacgttttggtaccagtttcattgattttggtccagatttgaagtctgtagacgattttgaagttgggggcagaagtaggattttgtg |
29685084 |
T |
|
| Q |
320 |
ctgaaccatgaatataagttgtttt |
344 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
29685085 |
ctgaaccatgaatataagttgtttt |
29685109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 23307424 - 23307539
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| |||| ||||| |||| |||| | |||||||||||||||||||| || ||| || |
|
|
| T |
23307424 |
tttgggacagggcttcactaaaacggtaagaactctctccctgttacttcaaatcatgtgaactttgtttctatggttagctaacgaaatgcccgacatt |
23307523 |
T |
|
| Q |
238 |
ttggtaccagtttcat |
253 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
23307524 |
ttggtaccggtttcat |
23307539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 7e-72; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 408 - 549
Target Start/End: Complemental strand, 50809135 - 50808994
Alignment:
| Q |
408 |
aatataagttgttttgaagtttggtatcacttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtata |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50809135 |
aatataagttgttttgaagtttggtatcacttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtata |
50809036 |
T |
|
| Q |
508 |
ttaagattttttaagctactatgttgcagttttagagaccta |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50809035 |
ttaagattttttaagctactatgttgcagttttacagaccta |
50808994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 408 - 549
Target Start/End: Original strand, 50866727 - 50866868
Alignment:
| Q |
408 |
aatataagttgttttgaagtttggtatcacttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtata |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50866727 |
aatataagttgttttgaagtttggtatcacttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtata |
50866826 |
T |
|
| Q |
508 |
ttaagattttttaagctactatgttgcagttttagagaccta |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50866827 |
ttaagattttttaagctactatgttgcagttttacagaccta |
50866868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 138 - 360
Target Start/End: Complemental strand, 22806911 - 22806685
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
22806911 |
tttgggacagggctccactaaaacagtaagaactttctctctgtaacttggaatcaagtgatttttaatgctatggttagataacgaaattacggacgtt |
22806812 |
T |
|
| Q |
238 |
ttggtaccagtttcattgattttggtccagatttgaagtctgtagacgatgttgaagttgggggcagaagtaggat------tttgtgctgaaccatgaa |
331 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| |||||||||| ||||||| ||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
22806811 |
ttggtaccagttttattgaatttggcccagtattgaagtctggagacgattttgaagttgggggcagaagtatgttttgtgctttgtgctgaaccatgaa |
22806712 |
T |
|
| Q |
332 |
tataagttgttttgatgtgctaaagtttg |
360 |
Q |
| |
|
||| ||||| |||||||||||||||||| |
|
|
| T |
22806711 |
tatgagttg--ttgatgtgctaaagtttg |
22806685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 438 - 513
Target Start/End: Complemental strand, 22761560 - 22761485
Alignment:
| Q |
438 |
ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatattaaga |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22761560 |
ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatgttaaga |
22761485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 380097 - 380212
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| || ||||||||| ||||| |||| |||| ||||||||||||||||||||||||| ||| || |
|
|
| T |
380097 |
tttgggacagggcttcaccaaaacggtaagaactctcttgctgtaacttcaaatcacgtgaactttgttgctatggttagctaacgaaattcccgacatt |
380196 |
T |
|
| Q |
238 |
ttggtaccagtttcat |
253 |
Q |
| |
|
|||||| | ||||||| |
|
|
| T |
380197 |
ttggtatcggtttcat |
380212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 3555755 - 3555870
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||| ||||||||||||| ||||| |||| |||| ||||||||||||| |||||||| || ||| || |
|
|
| T |
3555755 |
tttgggacagggcttcgctaaaacgggaagaactctctccctgtaacttcaaatcaggtgaactttgttgctatggttagccaacgaaatgcccgacatt |
3555854 |
T |
|
| Q |
238 |
ttggtaccagtttcat |
253 |
Q |
| |
|
||| |||| ||||||| |
|
|
| T |
3555855 |
ttgataccggtttcat |
3555870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 22914062 - 22914205
Alignment:
| Q |
8 |
ttagaagctgacagaaagtgattatggaggattagggcaagggcagaagtggataaattgtaattaggctgctgattgggatacaagctaggaataaact |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
22914062 |
ttagaagctgatagaaagtgattatggaggattagggcaagggcagaagtggataaattgtaattaggctgctgattgggatacaagataggaataagct |
22914161 |
T |
|
| Q |
108 |
gtttttggaagaagtttggtgaaacccgtatttgggacagggct |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22914162 |
gtttttggaagaagtttggtgaaacccgtatttgggatagggct |
22914205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 438 - 546
Target Start/End: Complemental strand, 93376 - 93268
Alignment:
| Q |
438 |
ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatattaagattttttaagctactatgttgcagt |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||| ||| |
|
|
| T |
93376 |
ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcacgatgtatgttcagattttttaagctactgtgttgtagt |
93277 |
T |
|
| Q |
538 |
tttagagac |
546 |
Q |
| |
|
||||||||| |
|
|
| T |
93276 |
tttagagac |
93268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 38383 - 38269
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| ||||| ||||| || |
|
|
| T |
38383 |
tttgggacagggctccactaaaatggtaagaactctctccctgtaactcggaatcaagtgatttttgatgctatggttcgataacaaaattacggacatt |
38284 |
T |
|
| Q |
238 |
ttggtaccagtttca |
252 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
38283 |
ttggtaccattttca |
38269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 14801344 - 14801458
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| ||||| ||||| || |
|
|
| T |
14801344 |
tttgggacagggctccactaaaatggtaagaactctctccctgtaactcggaatcaagtgatttttgatgctatggttcgataacaaaattacggacatt |
14801443 |
T |
|
| Q |
238 |
ttggtaccagtttca |
252 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
14801444 |
ttggtaccattttca |
14801458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 498 - 549
Target Start/End: Original strand, 5477521 - 5477572
Alignment:
| Q |
498 |
atgatgtatattaagattttttaagctactatgttgcagttttagagaccta |
549 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5477521 |
atgatgtacattaagattttttaagctactatgttgcagttttagagaccta |
5477572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 438 - 493
Target Start/End: Original strand, 18314711 - 18314766
Alignment:
| Q |
438 |
ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcc |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18314711 |
ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcc |
18314766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 18316811 - 18316868
Alignment:
| Q |
489 |
aatcctagcatgatgtatattaagattttttaagctactatgttgcagttttagagac |
546 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
18316811 |
aatcctagcatgatgtatgttaagattttttaagctaccatgttgccgttttagagac |
18316868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 498 - 549
Target Start/End: Complemental strand, 2685793 - 2685742
Alignment:
| Q |
498 |
atgatgtatattaagattttttaagctactatgttgcagttttagagaccta |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2685793 |
atgatgtatattaagattttttaagctactatgttgcagttttagagaccta |
2685742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 498 - 549
Target Start/End: Complemental strand, 45009217 - 45009166
Alignment:
| Q |
498 |
atgatgtatattaagattttttaagctactatgttgcagttttagagaccta |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45009217 |
atgatgtatattaagattttttaagctactatgttgcagttttagagaccta |
45009166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 253
Target Start/End: Complemental strand, 22828406 - 22828294
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||| || |||||||||||| |||||| ||| ||||||||||||||||| ||||||| ||| || |
|
|
| T |
22828406 |
tttgggacagcgcttcactaaaacggtaataactctttctctgtaacttgga---aagtgaactttattgctatggttagctaacaaaattcccgacatt |
22828310 |
T |
|
| Q |
238 |
ttggtaccagtttcat |
253 |
Q |
| |
|
|| ||||| ||||||| |
|
|
| T |
22828309 |
ttcgtaccggtttcat |
22828294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 8032397 - 8032433
Alignment:
| Q |
110 |
ttttggaagaagtttggtgaaacccgtatttgggaca |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8032397 |
ttttggaagaagtttggtgaaacccgtatttaggaca |
8032433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 795 - 852
Alignment:
| Q |
489 |
aatcctagcatgatgtatattaagattttttaagctactatgttgcagttttagagac |
546 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
795 |
aatcctagcatgatgtatgttaagattttttaagctaccatgttgccgttttagagac |
852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 9013 - 9103
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaatt |
228 |
Q |
| |
|
|||||||| ||||| | |||||| ||||||||||| ||| |||||||| |||||| ||| || ||| | ||||||||||||||||||||| |
|
|
| T |
9013 |
tttgggactgggcttcgctaaaatggtaagaactctctctctgtaactccgaatcaggtggttcttgtttctatggttagctaacgaaatt |
9103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 7081 - 7207
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
|||||||| ||||| | |||||| ||| | ||||| ||| |||||||| |||||| ||| || ||| | ||||||||||||||||||||| | | || | |
|
|
| T |
7081 |
tttgggaccgggcttcgctaaaatggttataactctctctctgtaactccgaatcaggtggttcttgtttctatggttagctaacgaaatttccgtcgct |
7180 |
T |
|
| Q |
238 |
ttggtaccagtttcattgattttggtc |
264 |
Q |
| |
|
|||| ||| ||||||| ||||||||| |
|
|
| T |
7181 |
ttggcaccggtttcatgaattttggtc |
7207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 14493 - 14619
Alignment:
| Q |
138 |
tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt |
237 |
Q |
| |
|
|||||||| ||||| | |||||| ||| | ||||| ||| |||||||| |||||| ||| || ||| | ||||||||||||||||||||| | | || | |
|
|
| T |
14493 |
tttgggaccgggcttcgctaaaatggttataactctctctctgtaactccgaatcaggtggttcttgtttctatggttagctaacgaaatttccgtcgct |
14592 |
T |
|
| Q |
238 |
ttggtaccagtttcattgattttggtc |
264 |
Q |
| |
|
|||| ||| ||||||| ||||||||| |
|
|
| T |
14593 |
ttggcaccggtttcatgaattttggtc |
14619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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