View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277D-Insertion-9 (Length: 741)
Name: NF1277D-Insertion-9
Description: NF1277D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277D-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 479
Target Start/End: Complemental strand, 8860512 - 8860057
Alignment:
| Q |
7 |
aatatatttatcctataataagatatcactacctctnnnnnnngatattactaaaataataattgaatatatgtgtaaaatttatttacaagtagaatgt |
106 |
Q |
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| T |
8860512 |
aatatatttattctataataagatattactacctctaaaaaaagatattactaaaataataattgaatatatgtgtaaaatttatttacaagtagaatgt |
8860413 |
T |
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| Q |
107 |
tttaaaatgaattccaacttgatcaatttcatttgtcaggtatattgttttaaatagagtatccatattagagtatccatatgataatacattttttgat |
206 |
Q |
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| T |
8860412 |
tttaaaatgaattccaacttgatcaatttcatttgtcaggtatattgtttttaatagagtatccatat--------------gataatacattttttgat |
8860327 |
T |
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| Q |
207 |
atacgtattatcgacgatatgagtgatactgatacaaagattaagaatgactatgttcgagaatataggaatgacatctttatataaagannnnnnngtt |
306 |
Q |
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| T |
8860326 |
atacgtattgtcgacgatatgagtgatactgatacaataattaagaatgactat--tcgagaatataggaatgacacctttatatatat-tttttttgtt |
8860230 |
T |
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| Q |
307 |
aaacagaactttatgcattgcaggataatgcagaagatttaaggaactggaatcttaatataccgatagtctgttttttcataaatgaagttcatatgtt |
406 |
Q |
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| T |
8860229 |
aaacagaactttatgcattgcaggataatgcataagatttaaggaactggaatcttaatatatcgatagtctgtttttccataaaagaagttcatatgtt |
8860130 |
T |
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| Q |
407 |
gatatttgattttaaagttgcatcagatttccctttaggtagatttacttggaataatttgatttcattaaag |
479 |
Q |
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| T |
8860129 |
gatatatgattttaaagttgcatcagatctccctttaggtagagttacttggaataatttgatttcattaaag |
8860057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 610 - 741
Target Start/End: Complemental strand, 8859960 - 8859832
Alignment:
| Q |
610 |
agattttgttgtttgtgtagagattactaaatgatcggatttcaacaaaatttaattaaatctgaacattaccaccaattctaccgaaaccttattcatt |
709 |
Q |
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| T |
8859960 |
agattttgttgtttgtgtagagattactaaatgatcggatttcaacaaaatttaattaaatctgaacatt---accaattctaccaaaaccatattcatt |
8859864 |
T |
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| Q |
710 |
cttcttcccttgtttttatttctacggaaata |
741 |
Q |
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| T |
8859863 |
cttcttcccttgtttttgtttctacggaaata |
8859832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 499 - 582
Target Start/End: Complemental strand, 8860029 - 8859946
Alignment:
| Q |
499 |
gaggtttgaaccaaacctttgcatatatcatgtattttcttaccaattgagctatacttatgaagacaaagattttgttgtttg |
582 |
Q |
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| T |
8860029 |
gaggtttgaaccaaacctttgcatatatcatgcatttctttaccaattgagttatactcacgaagacaaagattttgttgtttg |
8859946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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