View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1277R-Insertion-1 (Length: 1109)
Name: NF1277R-Insertion-1
Description: NF1277R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277R-Insertion-1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 843; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 843; E-Value: 0
Query Start/End: Original strand, 9 - 990
Target Start/End: Original strand, 10970732 - 10971716
Alignment:
| Q |
9 |
ctgatgactcactctattagtagagtaagnnnnnnnnnccatcattttcccttcactttgcctattttacaacattaagagcagggctacacttgtcatt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10970732 |
ctgatgactcactctattagtagagtaagttttttt--ccatcattttcccttcactttgcctattttacaacattaagggcagggctacacttgtcatt |
10970829 |
T |
|
| Q |
109 |
gattgttgttccgtgagtctcaccattattgtctttatttacacacaattcttaaagtcaaagaagatatgtagaaagaaattttgtgtccaagtggaag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10970830 |
gattgttgttccgtgagtctcaccattattgtctttatttacacacaattcttaaagtcaaagaagatatgtagaaagaaattttgtgtccaagtggtag |
10970929 |
T |
|
| Q |
209 |
gtatgtagaaagaaaatcctcaacatatcatcgcattggttccacatttttgcttttccaagatttcaacttcaccggttcattctgctcattgctcctt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10970930 |
atatgtagaaagaaaatcctcaacatatcatcgcattggttccacatttttgcttttccaagatttcaacttcaccggttcattctgctcattgctcctt |
10971029 |
T |
|
| Q |
309 |
aaatttgaaatccaattcctctcttgaaataaagtagaagcagcatgtctctaataatagttatgtacaatgaactatgaagtaatagagattttttatc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10971030 |
aaatttgaaatccaattcctctcttgaaataaagtagaagcagcatgtctctaataatagttatgtacaatgaactatgaagtaatagaga-tttttatc |
10971128 |
T |
|
| Q |
409 |
gaatagtaatataccaaggaatcattaagcaaaatttatcacgaagctctcagaaatgtcatataacccccacctgcaccctcaagagtgtacagtacag |
508 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10971129 |
gaatagtaatatatcaacgaatcattaagcaaaatttatcacgaagctctcagaaatgtcatataacccccacctgcaccctcaagagtgtacagtacag |
10971228 |
T |
|
| Q |
509 |
tagaagtataagcactctcatgacttcaaacaaataaagattccaccctgttttatacgttggcatcattagataaaccaataaaacaactaatactaat |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10971229 |
tagaagtataagcactctcatgacttcaaacaaataaagattccaccctgttttatacattggcatcattagataaaccaataaaacaactaatactaat |
10971328 |
T |
|
| Q |
609 |
tgtcattagcaattttatttannnnnnngtagcc-aaatattgacttcagaatttgagtcttaaacttttgacagttcatcatcactaaaataggccaac |
707 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10971329 |
tgtcatcagcaattttatttatttttttgtagccaaaatattgacttcagaatttgagtcttaaacttttgacagttcaccatcactaaaataggccaac |
10971428 |
T |
|
| Q |
708 |
agattggtctctagtgataaccaattggagcagcagcctcccgtagctctcgtccttggtaatgtatatcctgcaattcattccagcaaaatacaatcag |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10971429 |
agattggtctctagtgataaccaattggagcagcagcctcccgtagctctcgtccttggtaatgtatatcctgcaattcattccagcaaaatacaatcag |
10971528 |
T |
|
| Q |
808 |
tactcttgaatcccattcgtactcacatgaaggttctaagattttttccattacaaaaaagaatatgaaaagaaattgaaagctctctattaccatgatt |
907 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10971529 |
tactcttgaatcccattcatactcacatgaaggttctaagattttttccattacaaaaaagaatatgaaaagaaattgaaagctctctattaccatgatt |
10971628 |
T |
|
| Q |
908 |
ttgaatgtat-aagactt-attatgtcacagttc-agaaatgtgtactttatacactctg-atcat-ataaatcgggtacattatgtt |
990 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
10971629 |
ttgaatgtataaagacttaattatgtcacagttcaagaaatgtgtactttatacactctgaatcataataaatcgggtacattatgtt |
10971716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 830 - 919
Target Start/End: Complemental strand, 21373905 - 21373818
Alignment:
| Q |
830 |
tcacatgaaggttctaagattttttccattacaaaaaagaatatgaaaagaaattgaaagctctctattaccatgattttgaatgtataa |
919 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
21373905 |
tcacatgaagtatctaagattttttccatttcccaaaggaatatgaaaagaaattgaaag--ctctattaccatgattttgaatttataa |
21373818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 844 - 919
Target Start/End: Complemental strand, 21371796 - 21371723
Alignment:
| Q |
844 |
taagattttttccattacaaaaaagaatatgaaaagaaattgaaagctctctattaccatgattttgaatgtataa |
919 |
Q |
| |
|
|||||||||||||||| | ||| | |||||||||||||||||||| || |||||||||||| |||||| ||||| |
|
|
| T |
21371796 |
taagattttttccatttcccaaaggcatatgaaaagaaattgaaag--ctatattaccatgatgttgaatttataa |
21371723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University