View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277R-Insertion-2 (Length: 994)
Name: NF1277R-Insertion-2
Description: NF1277R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277R-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 22043680 - 22043423
Alignment:
| Q |
10 |
attcaaccaagactaccattatcatctgttaacaaaaggatggaacaaaataaaattgcattatcaattttctgataatgttgatattgtcttatcttac |
109 |
Q |
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| T |
22043680 |
attcaaccaagactaccattatcctctgttaacaaaaggatggaacaaaataaaattgcattatcaatttcctgataatgttgatgttgtcttatcttac |
22043581 |
T |
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| Q |
110 |
tatggaagtaannnnnnngcagttaaatctttcaatactctaaactccacatcacaaatcccatattttcatagtcgaaatctagatcctgctgtagcaa |
209 |
Q |
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| T |
22043580 |
tatggaagtagtttttttgcacttaaatctttcaatactctaaactccacatcacaaatcccagattttcatagtcgaaatctagatcctgctgtagcaa |
22043481 |
T |
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| Q |
210 |
tttactttgacgtcactctaactcaaaatatcatggacgaaatgtctttagttacgta |
267 |
Q |
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| T |
22043480 |
tttcctttgacgtcactctaactcaaaatatcatggacgaaatgtctttagttacgta |
22043423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 532 - 738
Target Start/End: Complemental strand, 22043085 - 22042879
Alignment:
| Q |
532 |
tcaagtttataaattagtaccatgatttagtaatatttttattttgtaaacaatgtctttcatgaaaattccctatcttgccttttacatcttataaata |
631 |
Q |
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| T |
22043085 |
tcaagtttataaatttgtaccatgatttagtaatattttaaatttgtaaacaatgtctttaatgaaaattccctatcttaccttttacatcttataaaaa |
22042986 |
T |
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| Q |
632 |
ttattgcattcaaatattaactatagacataccaatataaggaaacgtatgatatattgcagtcaaactaaaactgttggaaatttaattcaattggaaa |
731 |
Q |
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| T |
22042985 |
ttattgcattcaaatattaactatagacataccaatataatgaaacgtatgatatattgcagtcaaactaaaactgttggaaatctaaatcaattggaaa |
22042886 |
T |
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| Q |
732 |
gagatat |
738 |
Q |
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| T |
22042885 |
gacatat |
22042879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 349 - 433
Target Start/End: Complemental strand, 22043343 - 22043259
Alignment:
| Q |
349 |
actataccagaagatttcgccaactatatcaatcaaggatttcctcatcaactaattacattgtgcggtgataacgattgtgtaa |
433 |
Q |
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| T |
22043343 |
actataccagaagattttgccaactatatcaatcaaggatttcctcatcaactaattacattgtgcggtgataacgattgtgtaa |
22043259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 819 - 941
Target Start/End: Complemental strand, 22042876 - 22042754
Alignment:
| Q |
819 |
atgcttattcctctgtcattcctgctccaacttttattccatctcacatatgcaacttgggttttctctccatatatctttctatatatacaccatatat |
918 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||||||| |||| | | |
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| T |
22042876 |
atgcttattcctctgccattcctgctccaacttttattccatctcacatatgcaacttggcttttctctccatatatatctttatatataacccatctct |
22042777 |
T |
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| Q |
919 |
tgacataattgaatgttcacaat |
941 |
Q |
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|||||| |||| || |||||||| |
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| T |
22042776 |
tgacattattgcatcttcacaat |
22042754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 437 - 515
Target Start/End: Complemental strand, 22043212 - 22043134
Alignment:
| Q |
437 |
tcaagtaaactctccattaggctggaaatctttttcaatctccaacaactttaacacaaatgacattataaggttcaga |
515 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
22043212 |
tcaactaaactctccattaggctggaaatctttttcaatctccaacaattttaacacaaatgacattatacggttcaga |
22043134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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