View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277R-Insertion-3 (Length: 946)
Name: NF1277R-Insertion-3
Description: NF1277R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277R-Insertion-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 679; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 207 - 946
Target Start/End: Original strand, 43409423 - 43410162
Alignment:
| Q |
207 |
tcttcagctgatcatgatcatgatcaattcaccttcccaacaacaaatagttacatgccttcttctgcttctgaaccactatcacaagttgatgcagttt |
306 |
Q |
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| T |
43409423 |
tcttcagctgaccatgatcatgatcaattcaccttcccaacaacaaatagttacatgccttcttctgcttctgaaccactatcacaagttgatgcagttt |
43409522 |
T |
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| Q |
307 |
caggctgttcaaccaaagacacttcatcatcatgttcttggattgcacatatgatggaggctcaaaacaaggggaaaggcgtctccgtgtcattggaata |
406 |
Q |
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| T |
43409523 |
caggttgttcaaccaaagacacttcatcatcatgttcttggattgcacatatgatggaggctcagaacaaggggaaaggcgtctccgtgtcattggaata |
43409622 |
T |
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| Q |
407 |
ccttcaagagcctaaagaggaattcaaagtcacaacctgcaactgggacagggagagggaggacaatgtcttttcagaattcggccaagtactgcagcag |
506 |
Q |
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| T |
43409623 |
ccttcaagagcctaaagaggaattcaaagtcacaacctgcaactgggacagggagagggaggacaatgtcttttcagaattcggccaagtactgcagcag |
43409722 |
T |
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| Q |
507 |
cagcagcatgatcagagcagtaattcaagggcaagtgttgtaagtgtagaagctggtgaagaatctcctggtgcctgtggtcgccggtcgtcttcttctt |
606 |
Q |
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| T |
43409723 |
cagcagcatgatcagagcagtaattcaagggcaagtgttgtaagtgtagaagctggtgaagaatctcctggtgcctgtggtcgccggtcgtcttcttctt |
43409822 |
T |
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| Q |
607 |
cgagtgggagaaagtccggggacaagcgaagaaccaaggcggagaagactataagcttgccggttctgagacaatactttgccggaagcctaaaggacgc |
706 |
Q |
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| T |
43409823 |
cgagtgggagaaagtccggggacaagcgaagaaccaaggcggagaagactataagcttgccggttctgagacaatactttgccggaagcctaaaggacgc |
43409922 |
T |
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| Q |
707 |
tgcaaagagcatcggtggtaagtgacttgtaaaattcaatttcagtt----ttaattaattaattaaataaaactatgtcatggatattattatccaaca |
802 |
Q |
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| T |
43409923 |
cgcaaagagcatcggtggtaagtgacttgtaaaattcaatttcagttttaattaattaattaattaaataaaactatgtcatggatattattatccaaca |
43410022 |
T |
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| Q |
803 |
actcgatctcaatcacaatctgaaagtaattaaatatataataattttgtgatacagtgtgtcctacaactctgaaaaggatatgcagacagcatgggat |
902 |
Q |
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| T |
43410023 |
actcgatctcaatcacaatctg-aagtaattaa----ataataattttgtgatacagtgtgtcctacaactctgaaaaggatatgcagacagcatgggat |
43410117 |
T |
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| Q |
903 |
tacaagatggccttcaagaaaaataaagaa-gtgggccactcttt |
946 |
Q |
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| T |
43410118 |
tacaagatggccttcaagaaaaataaagaaggtgggccactcttt |
43410162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 43409222 - 43409390
Alignment:
| Q |
9 |
gccattccattgaggagtgtctacactggttctgctgctgattttgttttggaatttttccttcctaaagattgtcgtgacaccgaacagcagaaacaaa |
108 |
Q |
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| T |
43409222 |
gccattccattgaggagtgtctacactggttctgctgctgattttgttttggaatttttccttcctaaagattgtcgtgacaccgaacagcagaaacaaa |
43409321 |
T |
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| Q |
109 |
tgctaaactcattgtcccttgttgttcaacaagcttgtaggagcttgcatttgcatgtcgtcatggacg |
177 |
Q |
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| T |
43409322 |
tgctaaactcattgtcccttgttgttcaacaagcttgtaggagcttgcatttgcatgtcgtcatggacg |
43409390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 856 - 914
Target Start/End: Original strand, 25531358 - 25531416
Alignment:
| Q |
856 |
acagtgtgtcctacaactctgaaaaggatatgcagacagcatgggattacaagatggcc |
914 |
Q |
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| T |
25531358 |
acagtttgtccaacaactctgaagagaatatgcagacaacatggaatttcaagatggcc |
25531416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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