View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1277R-Insertion-4 (Length: 921)

Name: NF1277R-Insertion-4
Description: NF1277R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1277R-Insertion-4
NF1277R-Insertion-4
[»] chr1 (18 HSPs)
chr1 (294-611)||(23707191-23707505)
chr1 (58-295)||(6226868-6227106)
chr1 (18-288)||(25031091-25031361)
chr1 (33-288)||(9477786-9478042)
chr1 (18-287)||(1016702-1016972)
chr1 (18-288)||(10780869-10781128)
chr1 (11-288)||(9539313-9539580)
chr1 (18-287)||(34912456-34912727)
chr1 (637-800)||(23707603-23707766)
chr1 (809-921)||(23735933-23736045)
chr1 (810-921)||(23618963-23619074)
chr1 (810-921)||(23650308-23650419)
chr1 (11-148)||(8065119-8065257)
chr1 (44-166)||(27464069-27464192)
chr1 (822-918)||(23626472-23626568)
chr1 (822-918)||(23708198-23708294)
chr1 (137-288)||(42311323-42311464)
chr1 (18-153)||(23353534-23353669)
[»] chr6 (11 HSPs)
chr6 (11-295)||(21883396-21883681)
chr6 (18-287)||(24901827-24902097)
chr6 (18-287)||(18817058-18817328)
chr6 (9-241)||(14607499-14607732)
chr6 (56-288)||(2919730-2919963)
chr6 (61-288)||(6689385-6689613)
chr6 (126-290)||(19266890-19267054)
chr6 (341-461)||(11842814-11842938)
chr6 (11-172)||(30705427-30705588)
chr6 (71-171)||(25085237-25085338)
chr6 (98-159)||(22260250-22260310)
[»] chr3 (30 HSPs)
chr3 (11-290)||(38573115-38573395)
chr3 (11-288)||(24310015-24310293)
chr3 (38-288)||(23778423-23778672)
chr3 (11-288)||(36477731-36478009)
chr3 (33-283)||(7856660-7856907)
chr3 (18-287)||(26903296-26903566)
chr3 (18-287)||(36617474-36617744)
chr3 (296-610)||(54139775-54140097)
chr3 (300-547)||(52807990-52808236)
chr3 (650-791)||(54140207-54140348)
chr3 (137-288)||(7728748-7728899)
chr3 (59-239)||(25031993-25032177)
chr3 (18-288)||(36475613-36475886)
chr3 (137-288)||(8034854-8035005)
chr3 (297-461)||(53286755-53286921)
chr3 (33-288)||(26285521-26285766)
chr3 (637-731)||(52807771-52807865)
chr3 (810-918)||(52807019-52807127)
chr3 (39-153)||(35502350-35502465)
chr3 (33-88)||(52308781-52308836)
chr3 (54-153)||(30136769-30136866)
chr3 (54-153)||(30142898-30142995)
chr3 (54-153)||(30146320-30146417)
chr3 (810-870)||(54141120-54141180)
chr3 (741-800)||(52807614-52807673)
chr3 (97-157)||(41897717-41897777)
chr3 (476-519)||(1924485-1924528)
chr3 (90-153)||(6714029-6714092)
chr3 (322-371)||(1924243-1924293)
chr3 (872-918)||(52806933-52806979)
[»] chr5 (15 HSPs)
chr5 (18-288)||(36745085-36745356)
chr5 (18-287)||(43144709-43144979)
chr5 (56-295)||(36633672-36633912)
chr5 (18-240)||(17076356-17076579)
chr5 (34-241)||(25819240-25819447)
chr5 (58-153)||(39509268-39509364)
chr5 (39-153)||(5569121-5569242)
chr5 (18-122)||(30078095-30078202)
chr5 (95-169)||(11498187-11498262)
chr5 (95-169)||(11505543-11505618)
chr5 (95-169)||(11512937-11513012)
chr5 (95-169)||(11520313-11520388)
chr5 (95-169)||(11527721-11527796)
chr5 (11-78)||(34750977-34751044)
chr5 (33-78)||(5070012-5070057)
[»] chr7 (23 HSPs)
chr7 (34-287)||(33941327-33941581)
chr7 (11-288)||(2945083-2945362)
chr7 (18-281)||(1691793-1692062)
chr7 (11-229)||(24658561-24658780)
chr7 (18-287)||(43265631-43265901)
chr7 (18-286)||(30074330-30074588)
chr7 (11-164)||(38300188-38300341)
chr7 (160-287)||(38293505-38293632)
chr7 (137-288)||(10702820-10702971)
chr7 (9-287)||(46089882-46090159)
chr7 (58-185)||(8256734-8256862)
chr7 (19-153)||(25233095-25233230)
chr7 (35-169)||(27080575-27080710)
chr7 (35-169)||(27197591-27197726)
chr7 (135-288)||(32221704-32221856)
chr7 (175-288)||(24039500-24039613)
chr7 (22-149)||(39785648-39785776)
chr7 (98-169)||(1247839-1247910)
chr7 (95-165)||(8062569-8062639)
chr7 (95-169)||(38838337-38838411)
chr7 (71-169)||(25617858-25617957)
chr7 (18-153)||(26787423-26787560)
chr7 (58-153)||(33598005-33598101)
[»] chr4 (19 HSPs)
chr4 (18-288)||(4377427-4377699)
chr4 (11-288)||(36248011-36248289)
chr4 (18-288)||(33518221-33518491)
chr4 (34-218)||(2815733-2815920)
chr4 (296-611)||(48431609-48431920)
chr4 (56-288)||(50723002-50723224)
chr4 (18-152)||(2158776-2158911)
chr4 (126-288)||(5882679-5882841)
chr4 (138-244)||(2185307-2185413)
chr4 (71-288)||(24153718-24153925)
chr4 (11-153)||(1112138-1112280)
chr4 (200-288)||(2158909-2158997)
chr4 (18-153)||(25023057-25023192)
chr4 (71-169)||(40407798-40407897)
chr4 (129-169)||(56094925-56094965)
chr4 (71-169)||(13834173-13834272)
chr4 (132-231)||(49078356-49078455)
chr4 (103-169)||(35255142-35255208)
chr4 (133-166)||(32934340-32934373)
[»] chr8 (16 HSPs)
chr8 (9-288)||(44873422-44873703)
chr8 (18-287)||(29866311-29866581)
chr8 (19-287)||(2148528-2148797)
chr8 (10-295)||(24556586-24556872)
chr8 (18-287)||(45485892-45486162)
chr8 (36-288)||(32161081-32161335)
chr8 (35-288)||(6802449-6802703)
chr8 (9-169)||(7681171-7681332)
chr8 (19-122)||(34696879-34696983)
chr8 (71-169)||(41303312-41303411)
chr8 (71-169)||(3662180-3662280)
chr8 (33-90)||(11993599-11993656)
chr8 (18-153)||(43421754-43421889)
chr8 (18-78)||(10381567-10381627)
chr8 (102-169)||(4587093-4587160)
chr8 (54-149)||(7387963-7388054)
[»] chr2 (14 HSPs)
chr2 (11-288)||(3356782-3357059)
chr2 (11-288)||(32033113-32033389)
chr2 (137-288)||(6141559-6141710)
chr2 (57-295)||(11562191-11562429)
chr2 (137-288)||(18458861-18459012)
chr2 (18-231)||(4075588-4075801)
chr2 (37-288)||(18703350-18703599)
chr2 (127-287)||(4075822-4075982)
chr2 (39-147)||(7700509-7700618)
chr2 (71-169)||(7165409-7165508)
chr2 (39-153)||(38417898-38418013)
chr2 (56-153)||(16639002-16639099)
chr2 (35-118)||(34878498-34878582)
chr2 (95-171)||(20966312-20966385)
[»] scaffold0684 (1 HSPs)
scaffold0684 (21-78)||(4254-4311)
[»] scaffold0535 (1 HSPs)
scaffold0535 (92-153)||(9895-9956)
[»] scaffold0163 (1 HSPs)
scaffold0163 (21-78)||(3807-3864)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-78)||(461228-461296)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 294 - 611
Target Start/End: Original strand, 23707191 - 23707505
Alignment:
Q  294 tctcttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaat 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23707191 tctcttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaat 23707290  T
Q  394 tgaaattagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgcttacatatcttcttctctttgaaaaataaaattcttat 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |  |||| ||||||| |||||    
T  23707291 tgaaattagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgcttacatatc-tcctct-tgagaaacataaaatccttat 23707388  T
Q  494 tagtttgatctgacctctcctattcctcaacaatgcccaaggttactaaggtccggtttgaaaaggccaatataaatagcatttttcttttgacttttgc 593  Q
    |||||||||||| ||||| |||| || |||||||||| ||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||||    
T  23707389 tagtttgatctggcctcttctataccccaacaatgcctaagtttactaaggtcctgtttgaaaatgccaatataaatagca-ttttcttttgacgtttgc 23707487  T
Q  594 aatgccattcgtgtcatc 611  Q
    |||||||||| |||||||    
T  23707488 aatgccattcctgtcatc 23707505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 58 - 295
Target Start/End: Original strand, 6226868 - 6227106
Alignment:
Q  58 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccac 156  Q
    |||| ||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6226868 aaaatacacggtcaacacttgcagttgctatcggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccac 6226967  T
Q  157 aagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccact 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||    
T  6226968 aagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttttaacataattcttaagttgagtgtgtaacgctact 6227067  T
Q  257 tcaggaacatctataaaatcatttggataaaatttagtc 295  Q
    || |||||||||||||||| |||||||||||||| ||||    
T  6227068 tccggaacatctataaaataatttggataaaattcagtc 6227106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 25031091 - 25031361
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||  ||| ||||||||||||||||   ||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||    
T  25031091 attttgttacataggttaatcttcacaactttcatatttgaaaaaacacgttcaacaattgcagttgttaccggcaagagcaaagtcaacttcaaaagtt 25031190  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||| ||| |||| |||||||||||||    
T  25031191 tataaaccatagcaaatgtgttgcatttatttgtttccacaagttttgcacaaagatctgaaagccctctgaacttagcaa-ttttaggtcagatcgaac 25031289  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||||||| |||||||||||||| ||||||||||||| |  ||||||||||||||||||||||||||    
T  25031290 atttgtaacataactcttaagttgagtgtgtaacgccacttccgacacatctataaaatcatttggataaaa 25031361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 33 - 288
Target Start/End: Original strand, 9477786 - 9478042
Alignment:
Q  33 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaa 131  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||  ||| ||| |||||||||||||||| |||||||||| ||||||    
T  9477786 ttactcttcacaactttcatagctgaaaaaacacgtttaacacttgcaattgctactagcatgagaaaagccaacttcaaaactttataaaccatagcaa 9477885  T
Q  132 atgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataatt 231  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||||||| ||| |||||||| |||||||||||||||| |||||||    
T  9477886 atgtgttgcacttatttgtttccacaagttttgcgcatagatcttaaagccctttcaacttagcaaattttgggttagatcgaacatttgtaccataatt 9477985  T
Q  232 cttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||||  | ||||| | ||||| || ||||||||||||||||||||||||||    
T  9477986 cttaagttgacagcgtaacactacttccggcacatctataaaatcatttggataaaa 9478042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 1016972 - 1016702
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  1016972 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 1016873  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    || |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||   || |||||| ||||||  |||    
T  1016872 taaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgaaaattttggatcagatttaac 1016773  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  1016772 atttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 1016702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 10781128 - 10780869
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||  ||||||||||  ||||||||  ||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||    
T  10781128 attttgttacataggttactcttcaacactttcatatctgaaaaaacacgtt-aacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagtt 10781030  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    |||||||  ||| |||||||||||||||||||||||||           ||||||||||||||| |||| ||||||| ||| |||| |||||||||||||    
T  10781029 tataaactatagtaaatgtgttgcacttatttgtttcc-----------acaaagatctgaaagtcctttcaacttagcaaattttaggtcagatcgaac 10780941  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    || |||||||||||| |||||||||||| ||||||||||||  |  ||||||||||||| ||||||||||||    
T  10780940 atatgtaacataattattaagttgagtgcgtaacgccactttcgacacatctataaaattatttggataaaa 10780869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 9539580 - 9539313
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| |||||||||| ||  ||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| || |||||||||| ||||||||    
T  9539580 atcatccattttgttacataggttactcttcacaattttcatagctgaaaaaacacgtttaacacttgcagttgctatcggcaagagcaaaaccaacttc 9539481  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 209  Q
    |||||||||||||||  | ||||||||||||||||||||||||||           ||||||||||| |||||| | ||||||| ||| |||||| ||||    
T  9539480 aaaagtttataaaccaaaacaaatgtgttgcacttatttgtttcc-----------acaaagatctggaagccccttcaacttagcaaattttggatcag 9539392  T
Q  210 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||||||||||||||||||||||||||  |  ||||||||||||    || |||||||||| ||||||||||||    
T  9539391 atcgaacatttgtaacataattcttaagttgatggcataacgccacttccaacacttctataaaattatttggataaaa 9539313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 34912456 - 34912727
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||  |||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| || ||||  |||||||||||||||||| |    
T  34912456 attttgttacataggttactcttaacaactttcatagctgaaaaaacacattcaacacttgcagttactatcggcaaggacaaagccaacttcaaaagct 34912555  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaag-cccttacaacttaacaacttttgggtcagatcgaa 215  Q
    |||||||  |||  ||||||||||||||||||||||||| |||||||| ||||||||||||||| |  ||  |||||| ||| ||||  || |||| |||    
T  34912556 tataaactatagtgaatgtgttgcacttatttgtttccagaagttttggacaaagatctgaaagtcattttaaacttagcaaattttaagttagattgaa 34912655  T
Q  216 catttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    ||||| ||||||||||| ||||||||  | |||||||||||||  |||||||||||||||||||||||||||    
T  34912656 catttataacataattcctaagttgatggtgtaacgccacttccagaacatctataaaatcatttggataaa 34912727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 637 - 800
Target Start/End: Original strand, 23707603 - 23707766
Alignment:
Q  637 ctgcagctgtatttttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatc 736  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||    
T  23707603 ctgcagctgtctttttaccctaaaatttgaacacagcgttactgaaattttgaagcaaattctaggagatttggaaccattaacaaacttcaactatatc 23707702  T
Q  737 accgactttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt 800  Q
    ||  | |||||||||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  23707703 actaaatttcactcatctattctatcaccgaccttgtccccatatcgtgttgcatgtttttttt 23707766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 809 - 921
Target Start/End: Complemental strand, 23736045 - 23735933
Alignment:
Q  809 ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccattt 908  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23736045 ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcaatccattt 23735946  T
Q  909 gatacattagcac 921  Q
    |||||||||||||    
T  23735945 gatacattagcac 23735933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 810 - 921
Target Start/End: Complemental strand, 23619074 - 23618963
Alignment:
Q  810 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 909  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23619074 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatgtg 23618975  T
Q  910 atacattagcac 921  Q
    ||||||||||||    
T  23618974 atacattagcac 23618963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 810 - 921
Target Start/End: Complemental strand, 23650419 - 23650308
Alignment:
Q  810 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 909  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23650419 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatgtg 23650320  T
Q  910 atacattagcac 921  Q
    ||||||||||||    
T  23650319 atacattagcac 23650308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 8065119 - 8065257
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttc 109  Q
    |||||| ||||| |||| ||  ||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  8065119 atcatccattttattacataggttactcttcacaagtttcatagctgaaaaaacacgtttaacaattgcagttgctaccagcaagagcaaagccaacttc 8065218  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttattt 148  Q
    ||||||||||||||| || ||||||||||||| ||||||    
T  8065219 aaaagtttataaaccataacaaatgtgttgcatttattt 8065257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 27464192 - 27464069
Alignment:
Q  44 aactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcac 142  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||||| | ||| |||||||||||||||||| ||||||| | || ||||||| ||||||    
T  27464192 aactttcatagctgaaaaaacacgttcaacaattgcagctgctaccggctagaacaaagccaacttcaaaagcttataaatcataacaaatgtattgcac 27464093  T
Q  143 ttatttgtttccacaagttttgca 166  Q
    ||||||||||||||||||||||||    
T  27464092 ttatttgtttccacaagttttgca 27464069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 822 - 918
Target Start/End: Original strand, 23626472 - 23626568
Alignment:
Q  822 tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttgatacattag 918  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| |||||||||||    
T  23626472 tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctcttgtcccttcattccatgtgatacattag 23626568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 822 - 918
Target Start/End: Original strand, 23708198 - 23708294
Alignment:
Q  822 tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttgatacattag 918  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| |||||||||||    
T  23708198 tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctcttgtcccttcattccatgtgatacattag 23708294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 137 - 288
Target Start/End: Complemental strand, 42311464 - 42311323
Alignment:
Q  137 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 236  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||  |||||| ||| ||||           |||||||||||||||||||  ||    
T  42311464 ttgcacttatttgtttccacaagttttgcataaagatctaaaagccctttgaacttagcaaatttta----------aacatttgtaacataattcacaa 42311375  T
Q  237 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    |||||||| |||||| |||||| |  | ||||||||||||||||||||||||    
T  42311374 gttgagtgcgtaacgtcacttccgacatatctataaaatcatttggataaaa 42311323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 23353534 - 23353669
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgc-aagagcaaagccaacttcaaaagtt 116  Q
    ||||||||||  | || ||| |||||||||||||| ||| ||||||||| ||||||| ||||| |||||||||  ||||||||| ||||||||||||  |    
T  23353534 attttgttacgaagttgactattcacaactttcatagct-aaaaaacactttcaacagttgcaattgctaccggtaagagcaaaaccaacttcaaaaact 23353632  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    ||||||   ||| |||||||||| || ||||| ||||    
T  23353633 tataaattatagtaaatgtgttgtacctatttatttc 23353669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 21883396 - 21883681
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| |||||||||||||||||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21883396 atcatctattttgttacttaatttactcttctcaacttttatagttgaaaaaacacgttcaacacttgcagttgctaccggcaagagcaaagccaacttc 21883495  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 209  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  21883496 aaaagtttataaaccatagcaaatgtgttgtacttatttgtttccacaagttttgcacaaagatctaaaagccattacaacttaacaacttttgggtcag 21883595  T
Q  210 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaatttagtc 295  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||| ||||||||||||||| ||||    
T  21883596 attgaacatttgtaacataattcttaagttgagtgtgtaacgccactttcggagcatctataaaaacatttggataaaattcagtc 21883681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 24901827 - 24902097
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  24901827 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 24901926  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    || |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  ||| |||||| ||||||  |||    
T  24901927 taaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaac 24902026  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |||| |||||||||||| ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  24902027 atttctaacataattctgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 24902097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 18817058 - 18817328
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  18817058 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 18817157  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    || |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  ||| |||||| ||||||  |||    
T  18817158 taaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaac 18817257  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  18817258 atttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 18817328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 14607732 - 14607499
Alignment:
Q  9 taatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaact 107  Q
    |||||||| |||| ||||| ||  |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  14607732 taatcatctatttggttacataggttactcttcacaactttcataggtgaaaaaacacgtttaacacttgcagttgctaccgtcaagagcaaagtcaact 14607633  T
Q  108 tcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtc 207  Q
    ||||||||||||||||| || |  |||||||||||||||||||||| ||| |||| | |||||||||||||||||  |  |||||| ||| |||||||||    
T  14607632 tcaaaagtttataaaccataacttatgtgttgcacttatttgtttctacatgtttagaacaaagatctgaaagccaatttaacttagcaaattttgggtc 14607533  T
Q  208 agatcgaacatttgtaacataattcttaagttga 241  Q
    | ||||||||||||||||||||||||||||||||    
T  14607532 atatcgaacatttgtaacataattcttaagttga 14607499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 56 - 288
Target Start/End: Complemental strand, 2919963 - 2919730
Alignment:
Q  56 tgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttcc 154  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| || ||||||||||||| ||||||||||||    
T  2919963 tgaaaaaacacgttcaacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagttaataaaccataacaaatgtgttgcatttatttgtttcc 2919864  T
Q  155 acaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgcca 254  Q
    | |||||||||||||||||| ||||||| || ||||||| ||| |||||||||| ||||||||||||| |||||| | |||||||||  | |||||||||    
T  2919863 ataagttttgcacaaagatccgaaagccgtttcaacttagcaaattttgggtcaaatcgaacatttgttacataactattaagttgatggtgtaacgcca 2919764  T
Q  255 cttcaggaacatctataaaatcatttggataaaa 288  Q
     |||    |||||||| |||| |||| |||||||    
T  2919763 attccaacacatctattaaatgattttgataaaa 2919730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 61 - 288
Target Start/End: Original strand, 6689385 - 6689613
Alignment:
Q  61 aaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaag 159  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| | |||||||||||||| |||||||||||| ||||||    
T  6689385 aaacacgttcaacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgtacttatttgttttcacaag 6689484  T
Q  160 ttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttca 259  Q
    |||| ||| ||||||||||||||||| ||||||| ||| ||| ||| ||||| ||| |||| |||||||||| |||||||||  | ||||||||||||      
T  6689485 ttttacacgaagatctgaaagccctttcaacttagcaaatttagggccagattgaaaatttataacataatttttaagttgatggtgtaacgccactttc 6689584  T
Q  260 ggaacatctataaaatcatttggataaaa 288  Q
    |  | ||||||||||||||||||||||||    
T  6689585 gacatatctataaaatcatttggataaaa 6689613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 126 - 290
Target Start/End: Complemental strand, 19267054 - 19266890
Alignment:
Q  126 tagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaac 225  Q
    ||||| ||||| |||| | |||||||| ||||||||||||| ||||||||||||||||||  || ||| ||| |||||||||| ||||||||||||||||    
T  19267054 tagcatatgtgctgcattaatttgttttcacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaac 19266955  T
Q  226 ataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaatt 290  Q
    |||||| |||||||||  | ||||||||||||| |  |||||||| |||||||||||||||||||    
T  19266954 ataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaatt 19266890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 341 - 461
Target Start/End: Complemental strand, 11842938 - 11842814
Alignment:
Q  341 aaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaattgaaa--ttaga--atatctaccactttagcttctagagtatgtgtt 436  Q
    ||||||| |||| ||||||  |||||||||||||||| ||||||||||||| ||||    |||||  |||||||||||||||||||||||||||||||||    
T  11842938 aaggaatgtcaagatgaattgcagtcaagtaaactagatattagctttccagttgatcctttagacaatatctaccactttagcttctagagtatgtgtt 11842839  T
Q  437 tcctcaaacgtcaaattgcttacat 461  Q
    |||||||| |||||| || ||||||    
T  11842838 tcctcaaatgtcaaactgattacat 11842814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 30705427 - 30705588
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||| |||||||||||| || || | |||||||||  ||||| ||||||||| ||  ||||| ||||||| ||||||||| |||||||||||  ||||||    
T  30705427 atcaccgattttgttacatagttgattcttcacaatcttcatagctgaaaaa-catattcaaaacttgcaattgctaccgacaagagcaaagttaacttc 30705525  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaaga 172  Q
    |||  |||||||||| |||||||| | || ||| |||||| ||||||||||||||||||||||    
T  30705526 aaatatttataaaccatagcaaatattttacacctatttgcttccacaagttttgcacaaaga 30705588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 25085338 - 25085237
Alignment:
Q  71 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||| |||| |||||||||| ||| |||||||| | ||||||||| |||| || | ||| ||||||||||||||||||||||| ||||||||||||||||    
T  25085338 aacatttgcggttgctaccgacaaaagcaaagcaaccttcaaaagcttatgaatcatagtaaatgtgttgcacttatttgttttcacaagttttgcacaa 25085239  T
Q  170 ag 171  Q
    ||    
T  25085238 ag 25085237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 22260250 - 22260310
Alignment:
Q  98 aaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaag 159  Q
    |||||||| |||||||| ||||||||  |||||||||||||| |||||||||||||||||||    
T  22260250 aaagccaaattcaaaagcttataaaca-tagcaaatgtgttgtacttatttgtttccacaag 22260310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 38573115 - 38573395
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| |||||||||||||||||| |||||||||||||| | |||||||||||| | ||||||||||||||||||| || |||||||||||||||||||    
T  38573115 atcatcaattttgttacttaatttattcttcacaactttcgtagctgaaaaaacatgatcaacacttgcagttgctatcggcaagagcaaagccaacttc 38573214  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 209  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38573215 aaaagtttataaacaatagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatttgaaagcccttacaacttaacaacttttgggtcag 38573314  T
Q  210 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaatt 290  Q
    ||||||||| |||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||  ||| |||||||||    
T  38573315 atcgaacatctgtaacataattcttaagctgagtgcgtaacgctacttccggaacatctataaaattgttttgataaaatt 38573395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 24310015 - 24310293
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| ||||| |||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  24310015 atcatccattttattacatatgttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcagttgctaccaacaagagcaaagtcaacttc 24310114  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 209  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||| ||||| |||||    
T  24310115 aaaagtttataaaccatagcaaatgtgtcgcacttatttgtttccacaagttttgcacacagatctgaaagccctttcaacatagcaaattttgagtcag 24310214  T
Q  210 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||||||||||||||    
T  24310215 atcgaacatttgtaacataattcttaagttgcgtgtgtaatgccacttccggcacatctataaaatcatttggataaaa 24310293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 38 - 288
Target Start/End: Original strand, 23778423 - 23778672
Alignment:
Q  38 cttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtg 136  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  23778423 cttcacaactttcatagctaaaaaaacacgttcaacacttgcagttgctaccagcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtg 23778522  T
Q  137 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 236  Q
    ||||| ||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  23778523 ttgcatttatttgtttccacaagttt--cacaaagatcttaaagccctttcaacttaacaaattttgggtcagatcgaacatttgcaacataattcttaa 23778620  T
Q  237 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    |||||  | |||||| |||||| || ||||||||||||||||||||||||||    
T  23778621 gttgacggggtaacgtcacttccggcacatctataaaatcatttggataaaa 23778672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 36478009 - 36477731
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| |||||||||| ||  ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||    
T  36478009 atcatccattttgttacataggttactcttcacaactttcatatctgaaaaaacacgttcaacacttgccgttgctaccgacaaaagcaaagccaacttc 36477910  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 209  Q
    |||||||||||   | ||||||||| ||||||||||||| ||| |||| ||||||||||||||| ||||||||||| ||||||| ||| |||||||||||    
T  36477909 aaaagtttatagggcatagcaaatgcgttgcacttatttattttcacatgttttgcacaaagatatgaaagccctttcaacttagcaaattttgggtcag 36477810  T
Q  210 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||  || ||||||||||||| |||| |||||||    
T  36477809 atcgaacatttgtaacataattcttaagttgagtgtgtaacgccactttcggcacatctataaaattattttgataaaa 36477731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 33 - 283
Target Start/End: Original strand, 7856660 - 7856907
Alignment:
Q  33 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaa 131  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||    
T  7856660 ttactcttcacaaatttcatagctgaaaaa-cacgttcaacacttgcagttgctaccggcaaaagcaaagccaacttcaaaagtttataaaccataggaa 7856758  T
Q  132 atgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataatt 231  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| | || | |||||||||||||||||||||||||  ||||    
T  7856759 acgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttttaactt-agaaatgttgggtcagatcgaacatttgtaac--aatt 7856855  T
Q  232 cttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttgga 283  Q
    ||||| ||||||  ||||| ||||||| || |||||||||||||||||||||    
T  7856856 cttaaattgagttcgtaacaccacttccggcacatctataaaatcatttgga 7856907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 26903296 - 26903566
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  26903296 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 26903395  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    || |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  ||| |||||| ||||||  |||    
T  26903396 taaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaac 26903495  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  26903496 atttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 26903566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 36617744 - 36617474
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  36617744 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 36617645  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    || |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  ||| |||||| ||||||  |||    
T  36617644 taaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaac 36617545  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  36617544 atttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 36617474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 296 - 610
Target Start/End: Original strand, 54139775 - 54140097
Alignment:
Q  296 tcttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaattg 395  Q
    |||||| |||| |||||||||||| | |||||| |||| |||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||  |||    
T  54139775 tcttgctattggaattgaaactccggctttctgaataatttgtataaggaatgtcaaaatgaatcgcagtcaagtaaactagttattagcgttccggttg 54139874  T
Q  396 aaa--ttagaatatctaccactttagct----tctagagtatgtgtttcctcaaacgtcaaattgcttacatatcttcttctctttgaaaaataaaattc 489  Q
    |    || |||||||| |||||||||||    ||||||||| ||||||||||||| ||||||||| ||| |||||| || ||    || ||||||||| |    
T  54139875 atccttttgaatatctgccactttagctagcttctagagtacgtgtttcctcaaatgtcaaattgattagatatctcctcctga--gataaataaaatcc 54139972  T
Q  490 ttattagtt----tgatctgacctctcctattcctcaacaatgcccaaggttactaaggtccggtttgaaaaggccaatataaatagcatttttcttttg 585  Q
    |||||||||    |||| || ||||| ||||||| |||||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  54139973 ttattagttagtttgatttggcctcttctattccccaacaatgcccaagtttactaaggtccggtttgaaattgccaatataaatagcattcttcttttg 54140072  T
Q  586 acttttgcaatgccattcgtgtcat 610  Q
    |||||||||||||||||| ||||||    
T  54140073 acttttgcaatgccattcctgtcat 54140097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 300 - 547
Target Start/End: Complemental strand, 52808236 - 52807990
Alignment:
Q  300 gcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaattgaaa- 398  Q
    ||||||| || ||||||||||||||| ||||| ||||||||||||||| ||||||||||||  | ||||||||||||||||||||||||| ||||||       
T  52808236 gcaattggaaatgaaactccaggtttttgcatgaattgtttaaggaatgtcaaaatgaatcttaatcaagtaaactagttattagctttcaaattgatcc 52808137  T
Q  399 -ttagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgcttacatatcttcttctctttgaaaaataaaattcttattagt 497  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |  |||||||||||| | |||||||    
T  52808136 tttagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgattacatatc-tcctct-tgagaaaaataaaatccatattagt 52808039  T
Q  498 ttgatctgacctctcctattcctcaacaatgcccaaggttactaaggtcc 547  Q
    |||||||| || || |||| || ||||||||| |||| ||||||||||||    
T  52808038 ttgatctggccccttctatacc-caacaatgcgcaagtttactaaggtcc 52807990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 650 - 791
Target Start/End: Original strand, 54140207 - 54140348
Alignment:
Q  650 tttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatcaccgactttcact 749  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||  ||||||||||    
T  54140207 tttaccctaaaatttgaacacaatgttactgaaattttgaagcaagttctagaagatttgaaaccattaacaaacctcaattctatcatggactttcact 54140306  T
Q  750 catctgttctatcaccgacctcatccccatatcgtgttgcat 791  Q
    ||| | |||||||||||||||||||||||||| |||||||||    
T  54140307 catatattctatcaccgacctcatccccatattgtgttgcat 54140348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 137 - 288
Target Start/End: Complemental strand, 7728899 - 7728748
Alignment:
Q  137 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 236  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||  |||||||||||||||||||||||    
T  7728899 ttgcacttatttatttccacaagttttgcacaaagatctgaaaaccctttcaacttagcaaattttgggtcagatataacatttgtaacataattcttaa 7728800  T
Q  237 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||  |||||||||||| |  ||||||||||||||||||||||||||    
T  7728799 gttgagtgcataacgccacttccgacacatctataaaatcatttggataaaa 7728748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 59 - 239
Target Start/End: Complemental strand, 25032177 - 25031993
Alignment:
Q  59 aaaaacacgttcaacacttgcagttgctaccgc---aagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttcca 155  Q
    |||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||| ||||||| ||  |||||||||||| |||||||||||||    
T  25032177 aaaaacacgttcaacacttgcagttgctaccgcggcaagagcaaaaccaacttcaaaagttaataaaccataataaatgtgttgcatttatttgtttcca 25032078  T
Q  156 caagt-tttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagtt 239  Q
    ||||| |||||||||||||||||||||| || ||||||  ||| |||||| | | || |||||||||||||||||||||||||||    
T  25032077 caagtatttgcacaaagatctgaaagccgtttcaacttgccaaattttggattaaattgaacatttgtaacataattcttaagtt 25031993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 36475613 - 36475886
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaa-acacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagt 115  Q
    |||||||||| ||  |||||||| | ||||||||| ||||||||| |||| ||||||  ||||||||||||||| |||||| ||||||||||| ||| |     
T  36475613 attttgttacataggttactctttagaactttcatagctgaaaaacacacattcaaccgttgcagttgctaccgacaagagaaaagccaacttaaaaggc 36475712  T
Q  116 ttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaa-cttttgggtcagatcga 214  Q
    || |||| | || |||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||  |||| ||||| ||  |    
T  36475713 ttctaaatcataacaaatgtgttgcacttgtttgtttccacaaattttggacaaagatttgaaagccctttcaacttagcaatttttttggtcaaattaa 36475812  T
Q  215 acatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    |||||||||||||||||| ||||||||  | |||||||||| || || ||| || |||||||||||||||||||    
T  36475813 acatttgtaacataattcctaagttgatggtgtaacgccacatccggcacacctgtaaaatcatttggataaaa 36475886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 137 - 288
Target Start/End: Original strand, 8034854 - 8035005
Alignment:
Q  137 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||||| || |||||||||||| | |||||||||    
T  8034854 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttaggtcacatagaacatttgtaatacaattcttaa 8034953  T
Q  237 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    |||||||| || |||||||||  |  ||||||||||||||||||||||||||    
T  8034954 gttgagtgtgtgacgccactttcgacacatctataaaatcatttggataaaa 8035005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 297 - 461
Target Start/End: Original strand, 53286755 - 53286921
Alignment:
Q  297 cttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaattga 396  Q
    ||||| |||| |||||||||||| ||||||||||||| |||| ||||||||  ||| ||||||| |||||||||||||||| ||||||||||||| ||||    
T  53286755 cttgctattggaattgaaactcctggtttctgcataagttgtataaggaatgacaagatgaatcgcagtcaagtaaactagatattagctttccagttga 53286854  T
Q  397 --aattagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgcttacat 461  Q
        |||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  53286855 tcctttagaatatctaccactttagcttctagagtatgtgtttcctcaaatgtcaaactgattacat 53286921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 33 - 288
Target Start/End: Complemental strand, 26285766 - 26285521
Alignment:
Q  33 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgcaa-gagcaaagccaacttcaaaagtttataaaccctagcaa 131  Q
    |||||||||||||||||||   || ||||||||  ||||||||||| |||||||| || || |||||||| |||||||||||| ||||||||| ||  ||    
T  26285766 ttactcttcacaactttcaaatctaaaaaaacattttcaacacttgtagttgctaacggaaagagcaaagtcaacttcaaaagcttataaaccataataa 26285667  T
Q  132 atgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataatt 231  Q
    || ||||||||||||||||||||||||            ||||||||||||||| |||||||  || |||| |||||||||||| |||||||||||||||    
T  26285666 atttgttgcacttatttgtttccacaac-----------gatctgaaagccctttcaacttagtaaatttttggtcagatcgaaaatttgtaacataatt 26285578  T
Q  232 cttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
     |||||||||  | ||||| ||||||| |  |||| |||||||||||||||||||||    
T  26285577 attaagttgacggcgtaacaccacttccgacacatttataaaatcatttggataaaa 26285521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 637 - 731
Target Start/End: Complemental strand, 52807865 - 52807771
Alignment:
Q  637 ctgcagctgtatttttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaatt 731  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  52807865 ctgcagctgtctttttaccctaaaatttgaacacaatgtcactgaaattttgaagcaagttctaggagatttgaaatcattaacaaacctcaatt 52807771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 810 - 918
Target Start/End: Complemental strand, 52807127 - 52807019
Alignment:
Q  810 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 909  Q
    |||||||||  | ||||| ||||||||||||||||||||||||||||||| |||| ||||  |||||| ||||| | ||||||| |||||||||||| ||    
T  52807127 tgtgattttgaagctagaaacaatgtggtgactttgtgttgactgttagaaactagagcatgaatctatgaatgcagctcttgtgccttcattccatgtg 52807028  T
Q  910 atacattag 918  Q
    |||||||||    
T  52807027 atacattag 52807019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 35502465 - 35502350
Alignment:
Q  39 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgt 137  Q
    ||||||||||| || |||||||| |||  ||||||||||||| ||||||||  | ||||||||  |||||||||||| ||||||| | || |||||| ||    
T  35502465 ttcacaacttttatagctgaaaatacatattcaacacttgcaattgctacccacgagagcaaaatcaacttcaaaagcttataaatcataacaaatgggt 35502366  T
Q  138 tgcacttatttgtttc 153  Q
    ||||||||||||||||    
T  35502365 tgcacttatttgtttc 35502350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 52308836 - 52308781
Alignment:
Q  33 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctac 88  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  52308836 ttactcttcacaacattcatagctgaaaaaatacgttcaacacttgcagttgctac 52308781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 30136769 - 30136866
Alignment:
Q  54 gctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgttt 152  Q
    ||||||||||||||||||||||||||| |||||| || ||| |||||  | ||||| ||||| ||||||||| || ||||| ||||||||||||||||||    
T  30136769 gctgaaaaaacacgttcaacacttgcaattgctacccacaatagcaa--ctaactt-aaaagcttataaaccataacaaatatgttgcacttatttgttt 30136865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 30142898 - 30142995
Alignment:
Q  54 gctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgttt 152  Q
    ||||||||||||||||||||||||||| |||||| || ||| |||||  | ||||| ||||| ||||||||| || ||||| ||||||||||||||||||    
T  30142898 gctgaaaaaacacgttcaacacttgcaattgctacccacaatagcaa--ctaactt-aaaagcttataaaccataacaaatatgttgcacttatttgttt 30142994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 30146320 - 30146417
Alignment:
Q  54 gctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgttt 152  Q
    ||||||||||||||||||||||||||| |||||| || ||| |||||  | ||||| ||||| ||||||||| || ||||| ||||||||||||||||||    
T  30146320 gctgaaaaaacacgttcaacacttgcaattgctacccacaatagcaa--ctaactt-aaaagcttataaaccataacaaatatgttgcacttatttgttt 30146416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 810 - 870
Target Start/End: Original strand, 54141120 - 54141180
Alignment:
Q  810 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcac 870  Q
    ||||||||  |||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  54141120 tgtgatttgggatctagatacaatgtggtggctttgtgtcgactgttagacactagagcac 54141180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 741 - 800
Target Start/End: Complemental strand, 52807673 - 52807614
Alignment:
Q  741 actttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt 800  Q
    |||||||||||| | |||| ||||||||||| |||||||||||||||||||||| |||||    
T  52807673 actttcactcatgtattctctcaccgacctcgtccccatatcgtgttgcatgttcgtttt 52807614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 41897717 - 41897777
Alignment:
Q  97 caaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccaca 157  Q
    |||||| ||||||||||| |||||||   ||||||||||||||||||||||||||| ||||    
T  41897717 caaagctaacttcaaaagcttataaataatagcaaatgtgttgcacttatttgttttcaca 41897777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 519
Target Start/End: Original strand, 1924485 - 1924528
Alignment:
Q  476 gaaaaataaaattcttattagtttgatctgacctctcctattcc 519  Q
    |||||||| |||||||||||||||||||||| |||| |||||||    
T  1924485 gaaaaatataattcttattagtttgatctgagctcttctattcc 1924528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 6714092 - 6714029
Alignment:
Q  90 gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    ||||||| ||||| ||| ||||||| |||||| || || |||||||||||||| ||||||||||    
T  6714092 gcaagagtaaagctaacctcaaaagcttataagccataacaaatgtgttgcacctatttgtttc 6714029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 1924243 - 1924293
Alignment:
Q  322 gtttctgcataaattgtttaagg-aatttcaaaatgaatcacagtcaagta 371  Q
    |||||||||| |||||||||||| ||| ||||||||||||||| |||||||    
T  1924243 gtttctgcatgaattgtttaaggtaatgtcaaaatgaatcacaatcaagta 1924293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 872 - 918
Target Start/End: Complemental strand, 52806979 - 52806933
Alignment:
Q  872 aatctaagaatgtatctcttgtcccttcattccatttgatacattag 918  Q
    |||||| ||||||| ||||||| |||||||||||| |||||||||||    
T  52806979 aatctatgaatgtacctcttgtgccttcattccatgtgatacattag 52806933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 6e-92; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 36745085 - 36745356
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  36745085 attttgttacatatgttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcagttgttaccgacaagagcaaagtcaacttcaaaagtt 36745184  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    |||||||| || |||||||||||||||||| ||||| || || |||||||||||||||||||||||||| ||||||| |||  |||||||||||||||||    
T  36745185 tataaaccatatcaaatgtgttgcacttatatgttttcataatttttgcacaaagatctgaaagccctttcaacttagcaaactttgggtcagatcgaac 36745284  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    |||||||||||||||||||||||||||| ||||||||||||     ||||||||||||||||||||||||||    
T  36745285 atttgtaacataattcttaagttgagtgcgtaacgccactttcaacacatctataaaatcatttggataaaa 36745356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 43144709 - 43144979
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||  |||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  43144709 attttgttacataggttactctttacacctttcatagctgaaaaaatacgttcaacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagtt 43144808  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    |||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||||| | ||| ||||||| ||| |||| |||||||||||||    
T  43144809 tataaaccatagcaaatgtgttacatttatttgtttccacaagttttgcacaaagatttgaaaactctttcaacttagcaaattttcggtcagatcgaac 43144908  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |||||||| ||||||||||||||||    |||| | ||||||    |||||||| ||||||||||||||||    
T  43144909 atttgtaatataattcttaagttgatgttgtaatgtcacttccaacacatctatgaaatcatttggataaa 43144979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 56 - 295
Target Start/End: Complemental strand, 36633912 - 36633672
Alignment:
Q  56 tgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttcc 154  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||| |  ||||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  36633912 tgaaaaaacatgttcaacacttgcagttgctaccagcaaaagcaaagtctgcttcaaaagttaataaaccatagcaaatgtgttgcatttatttgtttcc 36633813  T
Q  155 acaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgcca 254  Q
    |||| |||||||||||||| ||||||    | | ||||| ||| |||||| ||| |||||| |||||||||| |||||||||||| |  | |||||||||    
T  36633812 acaaattttgcacaaagatgtgaaagtagattcgacttagcaaattttggatcaaatcgaatatttgtaacacaattcttaagttaatggcgtaacgcca 36633713  T
Q  255 cttcaggaacatctataaaatcatttggataaaatttagtc 295  Q
    |||| || |||||||| ||||||||||||||||| ||||||    
T  36633712 cttccggcacatctattaaatcatttggataaaacttagtc 36633672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 17076579 - 17076356
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||| | |||||||| ||  ||||| ||| ||||||||||||||||||||||| || | |||| |||||| ||||||||| ||||||| |    
T  17076579 attttgttacgtaaatgactcttcagaatcttcatagctaaaaaaacacgttcaacacttgcaattacaaccgacaagagtaaagccaacatcaaaagct 17076480  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    ||||||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| | | |||||| ||||||  |||    
T  17076479 tataaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaacttagcgaattttggatcagatttaac 17076380  T
Q  217 atttgtaacataattcttaagttg 240  Q
    |||  |||||||||||| ||||||    
T  17076379 attcctaacataattctgaagttg 17076356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 25819240 - 25819447
Alignment:
Q  34 tactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaa 132  Q
    |||| ||||||||||| || | |||||||||| |||| |||||||||||||||| | ||||||||||| |||| || ||||| | ||||| | |||||||    
T  25819240 tactattcacaactttaatagttgaaaaaacatgttcgacacttgcagttgctatcagcaagagcaaaaccaatttaaaaagct-ataaatcatagcaaa 25819338  T
Q  133 tgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattc 232  Q
    ||| ||||| ||||||||||||||||||||||||||||||| || |  |||||  |||||| ||| |||||| ||||||  |||||||  ||||| |||     
T  25819339 tgtattgcagttatttgtttccacaagttttgcacaaagatttggattcccttttaacttagcaaattttggatcagatttaacatttacaacattattt 25819438  T
Q  233 ttaagttga 241  Q
     ||||||||    
T  25819439 ctaagttga 25819447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 39509268 - 39509364
Alignment:
Q  58 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    |||||||| |||||||||||| | ||| ||||  |||| ||||||||||||||||||||||||||| | || ||||| |||||||||||||| ||||    
T  39509268 aaaaaacaagttcaacacttgtaattgttacccacaagggcaaagccaacttcaaaagtttataaatcgtaacaaatatgttgcacttatttatttc 39509364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 5569121 - 5569242
Alignment:
Q  39 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgcta-------ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaa 131  Q
    |||||||||||  | |||||||| |||| ||||||||||||| ||||||       || ||||||||||| |||||||||||| | ||||| | || |||    
T  5569121 ttcacaacttttgtagctgaaaatacacattcaacacttgcaattgctattgctacccacaagagcaaagtcaacttcaaaagctaataaatcataacaa 5569220  T
Q  132 atgtgttgcacttatttgtttc 153  Q
    ||||||||||||||||| ||||    
T  5569221 atgtgttgcacttatttatttc 5569242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 30078202 - 30078095
Alignment:
Q  18 attttgttacttaatttactcttcacaac---tttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaa 113  Q
    |||||||||| ||||| ||||||||||||   |||||  | |||||||||| |||||||||||| |||||||||| |||||||||||  |||||| ||||    
T  30078202 attttgttacataatt-actcttcacaacaattttcaatgttgaaaaaacatgttcaacacttgaagttgctaccggcaagagcaaaatcaactttaaaa 30078104  T
Q  114 gtttataaa 122  Q
    | |||||||    
T  30078103 gcttataaa 30078095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 11498262 - 11498187
Alignment:
Q  95 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcacaa 169  Q
    |||||||| ||||||||||| ||||||| | || ||||||  ||||||||||| |||||||||||||| |||||||    
T  11498262 agcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccacaagttatgcacaa 11498187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 11505618 - 11505543
Alignment:
Q  95 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcacaa 169  Q
    |||||||| ||||||||||| ||||||| | || ||||||  ||||||||||| |||||||||||||| |||||||    
T  11505618 agcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccacaagttatgcacaa 11505543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 11513012 - 11512937
Alignment:
Q  95 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcacaa 169  Q
    |||||||| ||||||||||| ||||||| | || ||||||  ||||||||||| |||||||||||||| |||||||    
T  11513012 agcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccacaagttatgcacaa 11512937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 11520388 - 11520313
Alignment:
Q  95 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcacaa 169  Q
    |||||||| ||||||||||| ||||||| | || ||||||  ||||||||||| |||||||||||||| |||||||    
T  11520388 agcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccacaagttatgcacaa 11520313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 11527796 - 11527721
Alignment:
Q  95 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcacaa 169  Q
    |||||||| ||||||||||| ||||||| | || ||||||  ||||||||||| |||||||||||||| |||||||    
T  11527796 agcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccacaagttatgcacaa 11527721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 34751044 - 34750977
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 78  Q
    |||||| |||||||||| |   |||||||||||||||||||| |||| ||| ||||||||||||||||    
T  34751044 atcatccattttgttacatgggttactcttcacaactttcatagctgtaaagacacgttcaacacttg 34750977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 5070012 - 5070057
Alignment:
Q  33 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 78  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||    
T  5070012 ttactcttatcaactttcatagctgaaaaaacacgttcaacacttg 5070057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 2e-91; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 34 - 287
Target Start/End: Complemental strand, 33941581 - 33941327
Alignment:
Q  34 tactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaa 132  Q
    ||||||||||||||||||| | ||||||||||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||    
T  33941581 tactcttcacaactttcatagatgaaaaaacacgttcaacgattgcagttgctaccggcaagagcaaatccaacttcaaaagtttataatccatagcaaa 33941482  T
Q  133 tgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||    
T  33941481 tgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttgggtcagatcgaacatttataacataattc 33941382  T
Q  233 ttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |||||||||    |||||||||||||  | |||||||||||||||||||| ||||    
T  33941381 ttaagttgacgatgtaacgccacttccagcacatctataaaatcatttgggtaaa 33941327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 2945362 - 2945083
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaa-cacgttcaacacttgcagttgctaccg-caagagcaaagccaactt 108  Q
    |||||| |||||||||  ||  ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  2945362 atcatccattttgttatgtaggttactcttcacaactttcatatctgaaaaaaacacgttcaacacttgcagttgctaccgacaagagcaaagtcaactt 2945263  T
Q  109 caaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtca 208  Q
    |||||||||||||| | |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||| |||| |||||    
T  2945262 caaaagtttataaatcatagcaaatgtgttgcatttatttgcttccacaagttttgtacaaagatctgaaagccctttcaacttagcaaattttcggtca 2945163  T
Q  209 gatcgaacatttgtaacataattcttaagttgagtga-gtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    |||||||||||||||| |||||||||||||||| ||| |||||| |||||| |  ||||||||||||||||||||||||||    
T  2945162 gatcgaacatttgtaatataattcttaagttga-tgacgtaacgtcacttccgacacatctataaaatcatttggataaaa 2945083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 1691793 - 1692062
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaaca--cttgcagttgctaccg-caagagcaaagccaacttcaaaag 114  Q
    |||||||||| ||  ||||||||||||||||| || |||||||||||||||||||||  |||||||||||||  | || ||||||| |||||||||||||    
T  1691793 attttgttacatatgttactcttcacaacttttatagctgaaaaaacacgttcaacatacttgcagttgctattggcatgagcaaaaccaacttcaaaag 1691892  T
Q  115 tttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaac---ttaacaacttttgggtcagat 211  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||   ||| ||| || ||||||||||    
T  1691893 tttataaaccatagcaaatgtgttgcacttatttgtttccataagttttgcacaaagatctgaaagtcctttcaactaattagcaaattatgggtcagat 1691992  T
Q  212 cgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttg 281  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||| ||| |||||    
T  1691993 cgaacatttgtaacataattcttaagttgagtgcgtaacgccacttctggcacatccatacaattatttg 1692062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 24658561 - 24658780
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| |||||||||| ||  |||||||| ||||  ||||| ||||||||||||||||||||||||||||||| || || |||||||||| ||||||||    
T  24658561 atcatccattttgttacataggttactctttacaatcttcatagctgaaaaaacacgttcaacacttgcagttgttatcggcaagagcaaaaccaacttc 24658660  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 209  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||| ||| |     
T  24658661 aaaagtttataaatcatagcaaatgtgttgcacttatttgtttccacaagttttgtgcaaagatctgaaagccctttcaacttaacaaattttcggttaa 24658760  T
Q  210 atcgaacatttgtaacataa 229  Q
    || |||||||||||||||||    
T  24658761 attgaacatttgtaacataa 24658780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 43265901 - 43265631
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  43265901 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 43265802  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    || |||||  ||||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  ||| |||||| ||||||  |||    
T  43265801 taaaaaccaaagcaagtgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaac 43265702  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  43265701 atttctaacataattttgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 43265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 30074588 - 30074330
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||        
T  30074588 attttgttacataggttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcagttgctaccgacaagagcaaatc-aacttcaaa---- 30074494  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
          || |||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||| ||||||| ||| |||| | |||||||||||    
T  30074493 ------ccatagcaaatgtgttgcatttatttgtttccaaaagttttacacaaagatttgaaagccctttcaacttagcaaattttcgttcagatcgaac 30074400  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataa 286  Q
    |||||||| ||||||||||||||||  | |||||||||||||    ||||||||||||| ||||||||||    
T  30074399 atttgtaatataattcttaagttgatggtgtaacgccacttccaacacatctataaaattatttggataa 30074330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 38300341 - 38300188
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| ||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||    
T  38300341 atcatccattttgttacttaatttactctttacaactttcatagatgaaaaaa-acgttcaacacttgcaattgctaccggcaagagcaaagtcaacttc 38300243  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttg 164  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38300242 aaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaagttttg 38300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 38293632 - 38293505
Alignment:
Q  160 ttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttca 259  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||     
T  38293632 ttttgcacaaaaatctgaaagcccttacaacttaacaacttttgggtcagattgaacatttgtaacataattcttaagttgagtgcgtaacgccacttcc 38293533  T
Q  260 ggaacatctataaaatcatttggataaa 287  Q
    |||||||||||||||| |||||||||||    
T  38293532 ggaacatctataaaattatttggataaa 38293505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 137 - 288
Target Start/End: Original strand, 10702820 - 10702971
Alignment:
Q  137 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||| ||||||||||||||||||||||||    
T  10702820 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagccttttcaacttagcaaattttgggtcagatagaacatttgtaacataattcttaa 10702919  T
Q  237 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||| |||| ||||||| |||||  | ||||||| ||||||||||||||||||    
T  10702920 gttcagtgtgtaacgcaacttccagcacatctagaaaatcatttggataaaa 10702971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 46090159 - 46089882
Alignment:
Q  9 taatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaact 107  Q
    |||||||| | |||||||| || |  |||||||||||||||||| | |||||||||||||||||||||| | |||||||| | ||||||||||||| |||    
T  46090159 taatcatccactttgttacatagtagactcttcacaactttcatagttgaaaaaacacgttcaacactt-cggttgctactggcaagagcaaagccgact 46090061  T
Q  108 tcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtc 207  Q
    || |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||| ||| |||  ||||    
T  46090060 tccaaagcttataaaccatagcaaatgtgttgcacttatttgttttcacaagttttgcacaaa-atctgaaagtcctttcaacttagcaaatttcaggtc 46089962  T
Q  208 agatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |  | ||||| || | ||||||||| ||||||||  |  |||||||||||| |  | | ||||||||| |||||| ||||    
T  46089961 aagttgaacaattattacataattcctaagttgatggcataacgccacttccgacataactataaaattatttgggtaaa 46089882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 8256734 - 8256862
Alignment:
Q  58 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccac 156  Q
    |||||||| |||||||||||||||||| ||||| ||||||||||  |||||||||||| ||||||||  ||||||||||| ||||||||||| |||||||    
T  8256734 aaaaaacatgttcaacacttgcagttgttaccggcaagagcaaaatcaacttcaaaagcttataaacaatagcaaatgtgctgcacttatttatttccac 8256833  T
Q  157 aagttttgcacaaagatctgaaagccctt 185  Q
    ||||||||||||||||||||||| |||||    
T  8256834 aagttttgcacaaagatctgaaacccctt 8256862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 25233095 - 25233230
Alignment:
Q  19 ttttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagttt 117  Q
    ||||||||| || || ||| |||||||||||  | ||||||||||||||||||||||||||| ||||||||  ||||||||||||||| |||||||| ||    
T  25233095 ttttgttacatagttaactgttcacaacttttgtagctgaaaaaacacgttcaacacttgcacttgctacccacaagagcaaagccaatttcaaaagctt 25233194  T
Q  118 ataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    ||||| | || |||||||||||||||||||||||||    
T  25233195 ataaatcataacaaatgtgttgcacttatttgtttc 25233230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 27080575 - 27080710
Alignment:
Q  35 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaat 133  Q
    ||||||||  |||||||| ||| |||||| | |||||||||||||||||||||||| ||| ||  |||||||||||||||  ||||||| | ||||||||    
T  27080575 actcttcatgactttcatagcttaaaaaatatgttcaacacttgcagttgctaccgacaaaagagaagccaacttcaaaaacttataaatcatagcaaat 27080674  T
Q  134 gtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||||||||||||||||||||||||||||| |||||    
T  27080675 gtgttgcacttatttgtttccacaagttttacacaa 27080710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 27197726 - 27197591
Alignment:
Q  35 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaat 133  Q
    ||||||||  |||||||| ||| |||||| | |||||||||||||||||||||||| ||| ||  |||||||||||||||  ||||||| | ||||||||    
T  27197726 actcttcatgactttcatagcttaaaaaatatgttcaacacttgcagttgctaccgacaaaagagaagccaacttcaaaaacttataaatcatagcaaat 27197627  T
Q  134 gtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||||||||||||||||||||||||||||| |||||    
T  27197626 gtgttgcacttatttgtttccacaagttttacacaa 27197591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 135 - 288
Target Start/End: Complemental strand, 32221856 - 32221704
Alignment:
Q  135 tgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattctt 234  Q
    ||||||| || |||||||||||||||||| ||||| ||||||||||||||| ||||||| ||| |||| ||||||||||||||  ||||| |||||| ||    
T  32221856 tgttgcatttgtttgtttccacaagttttacacaaggatctgaaagccctttcaacttagcaatttttcggtcagatcgaaca-ctgtaatataattttt 32221758  T
Q  235 aagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    |||||||  | ||||||||||||| |  ||| |||||||||||||| |||||||    
T  32221757 aagttgatggtgtaacgccacttccgacacaactataaaatcatttcgataaaa 32221704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 175 - 288
Target Start/End: Original strand, 24039500 - 24039613
Alignment:
Q  175 tgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaa 274  Q
    ||||||||||| ||||||| ||| |||||||| |||| ||| |||||||||||||||||||||||||||| ||||  ||||||  || ||||||||||||    
T  24039500 tgaaagccctttcaacttagcaaattttgggttagatagaatatttgtaacataattcttaagttgagtgtgtaataccactttcggcacatctataaaa 24039599  T
Q  275 tcatttggataaaa 288  Q
    ||||||||||||||    
T  24039600 tcatttggataaaa 24039613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 39785648 - 39785776
Alignment:
Q  22 tgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttata 120  Q
    |||||| || || |||||||||||| || || ||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||  |||||    
T  39785648 tgttacatagttgactcttcacaaccttgatagctgaaaaaacacattcaacacttgcagttgctaccaacaagagcaaaaccaacttcaaaaacttata 39785747  T
Q  121 aaccctagcaaatgtgttgcacttatttg 149  Q
     |||  |||||||||||| || |||||||    
T  39785748 caccaaagcaaatgtgttacaattatttg 39785776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 1247910 - 1247839
Alignment:
Q  98 aaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  1247910 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 1247839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 8062569 - 8062639
Alignment:
Q  95 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgc 165  Q
    ||||||||||| |||||||  ||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  8062569 agcaaagccaatttcaaaaacttataaatcatagcaaatgtgttgcacttatttgtttccacaagttttgc 8062639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 38838337 - 38838411
Alignment:
Q  95 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||||||| ||||||||||| ||||||| | | ||||||||||||| ||||||||||| || |||||||||||||    
T  38838337 agcaaagctaacttcaaaagcttataaatcattgcaaatgtgttgcgcttatttgttttcataagttttgcacaa 38838411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 25617858 - 25617957
Alignment:
Q  71 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||||||||| ||||||||| |||   ||||  |||||||||||| ||||||| | ||||||||||||| || ||||||||||| |||| ||||||||||    
T  25617858 aacacttgcacttgctaccgacaaatacaaaatcaacttcaaaagcttataaatcatagcaaatgtgttacatttatttgtttcaacaaattttgcacaa 25617957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 26787423 - 26787560
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgc-aagagcaaagccaacttcaaaa-gt 115  Q
    |||||||||| ||||| | | |||||||||||  | | ||| |||||| ||| |||||||||| ||| |||||  || ||||||  ||||||||||| ||    
T  26787423 attttgttacataattgattgttcacaacttttgtagatgacaaaacatgtttaacacttgcaattgataccgataaaagcaaaatcaacttcaaaaagt 26787522  T
Q  116 ttataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    ||||||||| || ||||| ||||||||||| |||||||    
T  26787523 ttataaaccataacaaatatgttgcacttacttgtttc 26787560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 33598005 - 33598101
Alignment:
Q  58 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    ||||||||  ||||||  ||||| ||||||||  ||||||||||||||| || ||||| ||||||| | || ||||||||||||||||| |||||||    
T  33598005 aaaaaacatattcaactattgcaattgctacccacaagagcaaagccaaatttaaaagcttataaatcataacaaatgtgttgcacttaattgtttc 33598101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 4e-90; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 4377427 - 4377699
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  4377427 attttgttacataggttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcaattgctaccggcaagagcaaagtcaacttcaaaagtt 4377526  T
Q  117 tataaaccc-tagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaa 215  Q
    ||||||  | |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||  ||| |||||||||||||||||    
T  4377527 tataaaatcatagcaaatgtgttgcacttatttgtttccacaagtcatgcacaaagatctgaaagccctttcaacttggcaaattttgggtcagatcgaa 4377626  T
Q  216 catttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||| ||||||||||||||||||||||||| ||| ||||||||  || ||||||||||||| ||||||||||||    
T  4377627 catctgtaacataattcttaagttgagtgcgtatcgccactttcggcacatctataaaattatttggataaaa 4377699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 36248011 - 36248289
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| |||||||||  ||  |||||||||||| |||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36248011 atcatccattttgttaaataggttactcttcacacctttcatatctgaaaaaacacgttcaacacttgcagttgctaccggcaagagcaaagccaacttc 36248110  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 209  Q
    ||||||||||||| | || |||| |||||||||||||||||||||||||||||| ||||||| ||| ||| | ||| ||||||||||| |||| ||||||    
T  36248111 aaaagtttataaatcataacaaaagtgttgcacttatttgtttccacaagttttacacaaaggtctaaaaactctttcaacttaacaaattttaggtcag 36248210  T
Q  210 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||| |||||||||| ||||||||| |||| ||||| |||| |  || ||||||||||||||||||||||||||    
T  36248211 atcgaacatctgtaacataactcttaagttaagtgcgtaacaccaccttcggcacatctataaaatcatttggataaaa 36248289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 33518221 - 33518491
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||  ||||||||||||||||||||  | |||||||||||| |||||||| ||||||| |||| |||||| ||||||||||| |||||||    
T  33518221 attttgttacataggttactcttcacaactttcatatccgaaaaaacacgtacaacacttacagttgccaccggcaagagtaaagccaactttaaaagtt 33518320  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    ||||||||    ||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||  |||||| ||| ||||||||||||||||||    
T  33518321 tataaaccacgacaaatgtgttgcacttatttgtttccacaagatttgcacaaatatctaaaagcccttttaacttagcaaattttgggtcagatcgaac 33518420  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    | |||||||||||||||||| ||||||| ||||||||||||   | ||||||||||||||||||||||||||    
T  33518421 a-ttgtaacataattcttaaattgagtgtgtaacgccactttcagcacatctataaaatcatttggataaaa 33518491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 2815733 - 2815920
Alignment:
Q  34 tactcttcacaactttcatggctgaaaaaacac--gttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagca 130  Q
    |||||||||||||||| || |||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||    
T  2815733 tactcttcacaactttaatagctgaaaaaacacacgttcaacacttgcagttgctaccggcaagagcaaagccaacttgaaaagtttataaaccatagca 2815832  T
Q  131 aatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  2815833 aatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttgggtcagatcgaacat 2815920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 296 - 611
Target Start/End: Complemental strand, 48431920 - 48431609
Alignment:
Q  296 tcttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaattg 395  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||  ||||||||||||||||||||||| ||| ||    
T  48431920 tcttgcaattggaattggaactccaggtttctgcatgaattgttaaaggaatgtcaaaatgaatcacaaccaagtaaactagttattagcttttcaactg 48431821  T
Q  396 a--aattagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgcttacatatcttcttctctttgaaaaataaaattcttat 493  Q
    |    ||||||| ||||||| ||||||||||||||||||| ||||||    |  || |||| ||||||||| || ||| |  |||||||||||| |||||    
T  48431820 atcctttagaatttctaccagtttagcttctagagtatgtctttcct---tctacagattggttacatatc-tcctct-taagaaaaataaaatccttat 48431726  T
Q  494 tagtttgatctgacctctcctattcctcaacaatgcccaaggttactaaggtcc--ggtttgaaaaggccaatataaatagcatttttcttttgactttt 591  Q
    ||||||||||||  ||||  ||| || |||||||||||||| ||||||||||||  |||||| ||| ||  |||||||||||| ||||| |||||| |||    
T  48431725 tagtttgatctggtctcttttatacc-caacaatgcccaagtttactaaggtccttggtttg-aaatgctgatataaatagca-ttttcgtttgacgttt 48431629  T
Q  592 gcaatgccattcgtgtcatc 611  Q
    |||||||||||| |||||||    
T  48431628 gcaatgccattcctgtcatc 48431609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 56 - 288
Target Start/End: Complemental strand, 50723224 - 50723002
Alignment:
Q  56 tgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttcc 154  Q
    ||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||  ||||||||||||||| |||||||         
T  50723224 tgaaaaaacacattcaacacttgcagttgctaccggcaagagtaaagtcaacttcaaaagttaataaaccacagcaaatgtgttgcatttatttg----- 50723130  T
Q  155 acaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgcca 254  Q
          ||| ||||||||||| |||| |||| ||||||| ||| |||||||||| || |||||||||||||||||| ||||||||||  | ||| | |||    
T  50723129 ------ttttcacaaagatcttaaagtcctttcaacttagcaaattttgggtcaaattgaacatttgtaacataatacttaagttgatggcgtagcacca 50723036  T
Q  255 cttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||  | |||| ||| |||||||||||||||||    
T  50723035 cttccagcacatttattaaatcatttggataaaa 50723002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 2158776 - 2158911
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||  |||||||||||||||||||| | ||||||||||| |||||||||| || ||||||||| |||||||||| ||||||||||||| |    
T  2158776 attttgttacataggttactcttcacaactttcatagttgaaaaaacacattcaacacttacacttgctaccggcaagagcaaaaccaacttcaaaagct 2158875  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgttt 152  Q
    || ||||| |||||||||||||||||||||||||||    
T  2158876 tacaaaccatagcaaatgtgttgcacttatttgttt 2158911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 126 - 288
Target Start/End: Original strand, 5882679 - 5882841
Alignment:
Q  126 tagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaac 225  Q
    |||||||||||||||| ||||||||||||| | | ||||||||||||| ||||||||| | ||||||| ||| |||| ||||||||| ||||||| |||     
T  5882679 tagcaaatgtgttgcatttatttgtttccaaatgatttgcacaaagatatgaaagcccattcaacttagcaaattttcggtcagatcaaacatttttaat 5882778  T
Q  226 ataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||||||||||  | |||||| |||||| |  |||||||| |||| ||||||||||||    
T  5882779 ataattcttaagttgatggcgtaacgacacttccgacacatctatcaaattatttggataaaa 5882841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 2185307 - 2185413
Alignment:
Q  138 tgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaag 237  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| | || ||||||| ||| |||| |||||||| |||||||||||||||| ||||||||    
T  2185307 tgcacttatttgttttcacaagttttgtacaaagatctgaaagtcttttcaacttaccaaattttaggtcagatagaacatttgtaacatagttcttaag 2185406  T
Q  238 ttgagtg 244  Q
    |||||||    
T  2185407 ttgagtg 2185413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 71 - 288
Target Start/End: Original strand, 24153718 - 24153925
Alignment:
Q  71 aacacttgcagttgctaccgc-aagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||| ||| |||||||||||| |||||||||| |||||||| | | ||||||||  ||| |||||||||||||||||||||||||| ||               
T  24153718 aacatttgtagttgctaccgccaagagcaaagtcaacttcacatgcttataaactatagtaaatgtgttgcacttatttgtttccataa----------- 24153806  T
Q  170 agatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatcta 269  Q
    |||| || |||||||| ||||||  ||| |||||| |||||| |||||||| || |||||||| ||||||||  | ||||||||||||| || |||| ||    
T  24153807 agatttggaagccctttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttccggcacattta 24153906  T
Q  270 taaaatcatttggataaaa 288  Q
    |||||| ||||||||||||    
T  24153907 taaaattatttggataaaa 24153925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 1112138 - 1112280
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| |||||||||| || ||  ||||||||||||||||| | ||||||  |||||||||| ||||| |||||| | | ||| |||||||||||||||    
T  1112138 atcatccattttgttacatagttggctcttcacaactttcatagttgaaaag-cacgttcaacgcttgccgttgctgctgacaaaagcaaagccaacttc 1112236  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    ||||  ||||||||| |  ||||||||||||||||| |||||||    
T  1112237 aaaaacttataaaccatcacaaatgtgttgcacttaattgtttc 1112280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 2158909 - 2158997
Alignment:
Q  200 tttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||| |||| |||||||||||||||||  | ||||||||  | |||||||||||||  | ||||||||||||||||||||||||||    
T  2158909 tttgggttagattgaacatttgtaacataaaacctaagttgatggcgtaacgccacttcctgcacatctataaaatcatttggataaaa 2158997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 25023192 - 25023057
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctac-cgcaagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| || || ||| ||||||||||||   || ||||||||| |||||||||||| ||||| ||  | |||||||||| |||||||||||||||    
T  25023192 attttgttacatagttgacttttcacaactttcgcagcagaaaaaacatgttcaacacttgtagttgttattcacaagagcaaaaccaacttcaaaagtt 25023093  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    ||||||   || ||||||| |||||||||||| ||||    
T  25023092 tataaa-tataacaaatgtattgcacttatttatttc 25023057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 40407897 - 40407798
Alignment:
Q  71 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    ||||||| || |||||| || ||| |||||| ||||||| ||||| |||||||   | |||||| |||||||||||||||||||||||||||||| ||||    
T  40407897 aacacttacaattgctatcgacaaaagcaaaaccaactttaaaagcttataaattattgcaaatatgttgcacttatttgtttccacaagttttgtacaa 40407798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 56094925 - 56094965
Alignment:
Q  129 caaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  56094925 caaatgtgttgcacttatttgtttccataagttttgcacaa 56094965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 13834173 - 13834272
Alignment:
Q  71 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||| |||| |||||||||| ||| || ||||| ||| ||||||| |||| ||   |||||||| ||| |||||| ||||||||||||||||||||||||    
T  13834173 aacatttgcggttgctaccggcaaaaggaaagctaacctcaaaagcttatgaattgtagcaaatatgtcgcacttgtttgtttccacaagttttgcacaa 13834272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 49078455 - 49078356
Alignment:
Q  132 atgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataatt 231  Q
    |||||||||||||||||||||   |||||||| || |||||||||||||  ||| || ||   ||| ||||| |||| ||||||||||| ||||||||||    
T  49078455 atgtgttgcacttatttgttttttcaagtttttcataaagatctgaaagttctttcagctgtgcaaattttgagtcacatcgaacatttctaacataatt 49078356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 35255142 - 35255208
Alignment:
Q  103 caacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||||||||||  ||||||| | ||||||||||||| ||||| |||||||||| || ||||||||||    
T  35255142 caacttcaaaaacttataaatcatagcaaatgtgttacacttgtttgtttccataaattttgcacaa 35255208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 32934373 - 32934340
Alignment:
Q  133 tgtgttgcacttatttgtttccacaagttttgca 166  Q
    |||||||||||||||||||| |||||||||||||    
T  32934373 tgtgttgcacttatttgttttcacaagttttgca 32934340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 8e-79; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 44873422 - 44873703
Alignment:
Q  9 taatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaa-cacgttcaacacttgcagttgctaccg-caagagcaaagccaac 106  Q
    |||||| | |||||||||| ||  ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  44873422 taatcacccattttgttacataggttactcttcacaactttcatatctgaaaaaaacacgttcaacacttgcagttgctaccggcaaaagcaaagccaac 44873521  T
Q  107 ttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggt 206  Q
    |||||||||||||||| | || ||| |||||||||| |||||||||| || ||||||||||||||||||||||  |||| |||||||| |  |||||| |    
T  44873522 ttcaaaagtttataaatcataacaattgtgttgcacatatttgtttctacgagttttgcacaaagatctgaaatgcctttcaacttaagacattttggat 44873621  T
Q  207 cagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||| || ||||||||||||||||||||||||| ||||| ||||||  || ||||||||||||||||||||||||||    
T  44873622 cagatcgaatatatgtaacataattcttaagttgagtgggtaacaccactttcggtacatctataaaatcatttggataaaa 44873703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 29866311 - 29866581
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||  |||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| ||||| ||| | ||| ||||||||||    
T  29866311 attttgttacataggttactcttcacaactttcatagctgaaaaaatacgttaaacacttgcagttgctaccggcaagaacaaggtcaagttcaaaagtt 29866410  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    || ||| | |||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||| ||||||| |||||    
T  29866411 tagaaatcatagcaaatgtgttgcgtttatttgtttccacaagttttgcacaaagatctgaaaaccctttcaacttagcaaattttcggtcagaacgaac 29866510  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |||||||| ||||||||||||||||  | |||| | |||||| |  |||||||||||||||||||||||||    
T  29866511 atttgtaatataattcttaagttgatggtgtaatgtcacttccgacacatctataaaatcatttggataaa 29866581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 2148528 - 2148797
Alignment:
Q  19 ttttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagttt 117  Q
    ||||||||| ||||| |||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||    
T  2148528 ttttgttacataattgactcttaacaaccttcatagctgaaaaaacacgttcaacatttgcagttgctaccgacaagagcaaagccagcttcaaaagctt 2148627  T
Q  118 ataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaaca 217  Q
    ||||| | ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||  ||| |||||||||||||  ||||    
T  2148628 ataaatcatagaaaatgtgttgcacttatttgttttcacaagttttgcacaaagatctgaaagccctttacactttgcaaattttgggtcagatttaaca 2148727  T
Q  218 tttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    ||| |||||||||||| |||||||  | | ||||||||||  || |||| || |||||||||||||||||    
T  2148728 tttataacataattctgaagttgatggcgcaacgccacttatggcacatttaaaaaatcatttggataaa 2148797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 24556872 - 24556586
Alignment:
Q  10 aatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgc-aagagcaaagccaactt 108  Q
    ||||||| |||||||||| || ||  ||||||||||||||||| | ||||||||||| ||||| |||||||||||||||||  |||||||||||||||||    
T  24556872 aatcatccattttgttacatagttgtctcttcacaactttcatagttgaaaaaacacattcaatacttgcagttgctaccggtaagagcaaagccaactt 24556773  T
Q  109 caaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtca 208  Q
    |||||  ||||||||| || |||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||||| ||| | ||| ||||    
T  24556772 caaaatcttataaaccataacaaatgtgttgcacttatttgttttcacaagttttgcacaaagttatgaaagccctttcaacttagcaaatcttgagtca 24556673  T
Q  209 gatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaatttagtc 295  Q
    ||| |||||||| ||||||||||| ||| ||||  | |||||||||||||    || |||| |||||||||||||||||||| ||||    
T  24556672 gattgaacatttataacataattcctaacttgatggcgtaacgccacttccaccacttctacaaaatcatttggataaaattcagtc 24556586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 45486162 - 45485892
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  45486162 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 45486063  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    || |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  ||| |||||| ||||||  |||    
T  45486062 taaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaac 45485963  T
Q  217 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    |||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  45485962 atttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 45485892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 36 - 288
Target Start/End: Complemental strand, 32161335 - 32161081
Alignment:
Q  36 ctcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccc-tagcaaat 133  Q
    |||||||||| |||||| | |||||||||||||||||||||| |||||||||||| |||||| || |||||||||||||| ||||||| || || |||||    
T  32161335 ctcttcacaattttcatagttgaaaaaacacgttcaacacttacagttgctaccggcaagagtaatgccaacttcaaaagcttataaaaccatatcaaat 32161236  T
Q  134 gtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattct 233  Q
    |||   |||||||||||||||| |||||||||||||| ||||||||| |||| ||| ||| ||| ||||||||||||| |||||||||||||||||||||    
T  32161235 gtgcaacacttatttgtttccataagttttgcacaaaaatctgaaagtcctttcaatttagcaaattttgggtcagattgaacatttgtaacataattct 32161136  T
Q  234 taagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||  | ||||| ||||||  |  |||||||||||||||||||| |||||    
T  32161135 taagttgatggcgtaacaccacttttgatacatctataaaatcatttgggtaaaa 32161081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 35 - 288
Target Start/End: Complemental strand, 6802703 - 6802449
Alignment:
Q  35 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaat 133  Q
    |||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||| | |||||||| ||||||||||||| ||||||| | |  |||||    
T  6802703 actcttcacaactttcatagttgaaaaaacacgtgcaatacttgcagttgctaccggcgagagcaaaaccaacttcaaaagcttataaagcatttcaaat 6802604  T
Q  134 gtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattct 233  Q
    |||||||| ||| ||||||||||| |||||||||||| || |||| | |||| | ||||  ||| ||||||||||||| |||||||| |||||||||||     
T  6802603 gtgttgcatttaattgtttccacatgttttgcacaaaaatatgaaggtcctttcgacttggcaaattttgggtcagattgaacatttataacataattcc 6802504  T
Q  234 taagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||  | ||||| ||||||| |  ||||| ||||||||||||| ||||||    
T  6802503 taagttgatggcgtaacaccacttctgacacatccataaaatcatttgaataaaa 6802449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 7681332 - 7681171
Alignment:
Q  9 taatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaact 107  Q
    |||||||| |||||||||| || || ||||||||||||||| || || ||||||||| ||||||||||||||  |||||||  ||||||||||  ||| |    
T  7681332 taatcatctattttgttacatagttgactcttcacaacttttatagcagaaaaaacatgttcaacacttgcatatgctaccaacaagagcaaaatcaatt 7681233  T
Q  108 tcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||||||||||||||   ||  |||||||||||||||| |||||| ||||||||||||||||    
T  7681232 tcaaaagtttataaataataataaatgtgttgcacttacttgttttcacaagttttgcacaa 7681171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 34696983 - 34696879
Alignment:
Q  19 ttttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagttt 117  Q
    ||||||||| ||  ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||||||    
T  34696983 ttttgttacataggttactcttcacaattttcatagctgaaaaaacacgttcaacacttgcaattgctaccggcaagagcaaagtcaatttcaaaagttt 34696884  T
Q  118 ataaa 122  Q
    |||||    
T  34696883 ataaa 34696879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 41303411 - 41303312
Alignment:
Q  71 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    |||||||||| |||||| || ||| |||||| ||||||||||||| ||| ||| | ||||||||||||||||||||||||||| ||||||||||||||||    
T  41303411 aacacttgcatttgctatcgacaaaagcaaaaccaacttcaaaagcttacaaatcatagcaaatgtgttgcacttatttgttttcacaagttttgcacaa 41303312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 3662180 - 3662280
Alignment:
Q  71 aacacttgcagttgctaccgc-aagagcaaagccaacttcaaaag-tttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcaca 168  Q
    |||||||||| |||||||||  || |||||||||||||||||||  |||||||| | ||||||||||| |||||||||||||||||| ||||||||||||    
T  3662180 aacacttgcatttgctaccgttaaaagcaaagccaacttcaaaaactttataaatcatagcaaatgtgctgcacttatttgtttccataagttttgcaca 3662279  T
Q  169 a 169  Q
    |    
T  3662280 a 3662280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 11993656 - 11993599
Alignment:
Q  33 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg 90  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  11993656 ttactcttcacaacattcatagctgaaaaaacacgttcaacacttgcagttgctaccg 11993599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 43421754 - 43421889
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    |||||||||| ||||| ||| |||||||||||||| | | |||||||| |||| ||||||||| || |||||  ||| |||||||||||||| |||||||    
T  43421754 attttgttacataattgacttttcacaactttcatagtt-aaaaaacatgttcgacacttgcaatttctacccacaaaagcaaagccaactttaaaagtt 43421852  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    |||||||  ||  |||| |||||||||||||| ||||    
T  43421853 tataaactataataaatatgttgcacttatttatttc 43421889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 10381567 - 10381627
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 78  Q
    ||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  10381567 attttattacataagttactcttcacaactttcatagctgaaaaaacacgttcaacacttg 10381627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 4587160 - 4587093
Alignment:
Q  102 ccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    ||||||||||||  ||||||||| | |||||||||||| ||||||||||||||| |||||||||||||    
T  4587160 ccaacttcaaaaacttataaaccattgcaaatgtgttggacttatttgtttccataagttttgcacaa 4587093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 7388054 - 7387963
Alignment:
Q  54 gctgaaaaaacacgttcaacacttgcagttgctac-cgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttg 149  Q
    |||||||||||| |||||||||||||| ||||||| | |||||||     |||||||||||| ||||||| | || |||||||||||||| ||||||    
T  7388054 gctgaaaaaacatgttcaacacttgcaattgctactcacaagagc-----caacttcaaaagattataaatcataacaaatgtgttgcacctatttg 7387963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 3357059 - 3356782
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| |||||||||| || |||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||  ||| ||||||| |||||||    
T  3357059 atcatccattttgttacatagtttactcttcacaacttttatagctgaaaaa-cacattcaacacttgcagttgctaccaacaatagcaaagtcaacttc 3356961  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 209  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||| ||||||    
T  3356960 aaaagtttataaatcatagcaaatgtgttgcatttatttgtttccacaggttttgcacaaagatatgaaagccctttcaacttaacaaattttcggtcag 3356861  T
Q  210 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||| ||||||| ||| ||||||| ||||||||  |  |||||||||| | |  ||||||||||||||||||| ||||||    
T  3356860 atcaaacatttataatataattcataagttgatggcataacgccactaccgacacatctataaaatcatttgtataaaa 3356782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 32033113 - 32033389
Alignment:
Q  11 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 109  Q
    |||||| |||||||||| ||  |||||||||||||||||||| ||| ||||||| | || ||||||||||| || ||||| |||||||||| ||||||||    
T  32033113 atcatccattttgttacataggttactcttcacaactttcatagctaaaaaaacgcctttaacacttgcagctgttaccggcaagagcaaaaccaacttc 32033212  T
Q  110 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 209  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| | |  |||  |||||||| ||||||| ||| ||||||||| |    
T  32033213 aaaagtttataaatcatagcaaatgtgttgcatttatttgtttccacaagttttgcaaagacttct--aagccctttcaacttagcaaattttgggtcgg 32033310  T
Q  210 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||||||| ||||||||||||||||||||  | | ||| ||||||| |  ||||||||| ||||||||||||||||    
T  32033311 atcgaacatttataacataattcttaagttgatggcgaaacaccacttccgacacatctatacaatcatttggataaaa 32033389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 137 - 288
Target Start/End: Original strand, 6141559 - 6141710
Alignment:
Q  137 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||| ||||||||||||||||||||||||    
T  6141559 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttgtgtcagatagaacatttgtaacataattcttaa 6141658  T
Q  237 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    |||||||| ||||||||||||| |  ||||||||||||||||||||||||||    
T  6141659 gttgagtgcgtaacgccacttccgatacatctataaaatcatttggataaaa 6141710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 57 - 295
Target Start/End: Original strand, 11562191 - 11562429
Alignment:
Q  57 gaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttcca 155  Q
    |||||||||| ||||| ||||||| ||||||||| |||||| |||||||||||||| |||| ||||||  |||||||| ||||||| |||||||||||||    
T  11562191 gaaaaaacacattcaa-acttgcaattgctaccggcaagagtaaagccaacttcaatagttaataaactatagcaaatatgttgcatttatttgtttcca 11562289  T
Q  156 caagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccac 255  Q
    ||||||||||||||| || |||||| | || ||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||  | ||||||||||    
T  11562290 caagttttgcacaaatatatgaaagtcgtttcaacttagcaaattttgggtcaaatcaaacatttgtaacataattcttaagttgatggcgtaacgccac 11562389  T
Q  256 ttcaggaacatctataaaatcatttggataaaatttagtc 295  Q
    ||| |  |||||||| ||||||||| ||||||||| ||||    
T  11562390 ttccgacacatctattaaatcatttagataaaattcagtc 11562429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 137 - 288
Target Start/End: Original strand, 18458861 - 18459012
Alignment:
Q  137 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||| |||| ||||||||||||||||||| ||||    
T  18458861 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttaggttagatagaacatttgtaacataattattaa 18458960  T
Q  237 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    |||||||| ||||||||||||| || ||||||||||||||||||||||||||    
T  18458961 gttgagtgtgtaacgccacttccggcacatctataaaatcatttggataaaa 18459012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 4075588 - 4075801
Alignment:
Q  18 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 116  Q
    ||||| |||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  4075588 attttattacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 4075687  T
Q  117 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 216  Q
    || |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||  ||| |||||| ||||||  |||    
T  4075688 taaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatc-ggaagccctttcaactttgcaaattttggatcagatttaac 4075786  T
Q  217 atttgtaacataatt 231  Q
    |||| ||||||||||    
T  4075787 atttctaacataatt 4075801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 37 - 288
Target Start/End: Complemental strand, 18703599 - 18703350
Alignment:
Q  37 tcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgt 135  Q
    |||||||||||||||| | |||||||| ||||||||||| || ||||||||  | |||||||||||||||||||||||| ||||||||| || ||||| |    
T  18703599 tcttcacaactttcatagttgaaaaaatacgttcaacacatgtagttgctataggcaagagcaaagccaacttcaaaagcttataaaccatatcaaatat 18703500  T
Q  136 gttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattctta 235  Q
    ||| |||||||||||||| || ||||||| |||| ||||| ||| | ||| |||||   ||| |||||||| |||| |||||||| ||||||||||   |    
T  18703499 gtttcacttatttgtttctactagttttgaacaaggatctaaaaactcttgcaact---caaattttgggttagattgaacatttataacataatttcga 18703403  T
Q  236 agttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 288  Q
    ||||||  | | ||| |||||||    || |||| ||||||||||||||||||    
T  18703402 agttgatggcgcaaccccacttctaacacttctaaaaaatcatttggataaaa 18703350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 127 - 287
Target Start/End: Original strand, 4075822 - 4075982
Alignment:
Q  127 agcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaaca 226  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||||  |||||||||| ||||||  ||| |||||| ||||||  ||||||| |||||    
T  4075822 agcaaatgtcttgcacttatttatttccacaagtattgcacaaagattcgaaagccctttcaactttgcaaattttggatcagatttaacatttctaaca 4075921  T
Q  227 taattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 287  Q
    ||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  4075922 taattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 4075982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 7700509 - 7700618
Alignment:
Q  39 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgt 137  Q
    |||| ||||||||| ||||||||||||||||||||| |||||  ||||||| |||||||||||| |||| ||||||| ||||||||| || |||||||||    
T  7700509 ttcataactttcatagctgaaaaaacacgttcaacatttgcaaatgctaccagcaagagcaaagtcaacgtcaaaagcttataaaccataacaaatgtgt 7700608  T
Q  138 tgcacttatt 147  Q
    || |||||||    
T  7700609 tgaacttatt 7700618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 7165409 - 7165508
Alignment:
Q  71 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 169  Q
    ||||||||| |||||||||| ||| ||||| ||||| |||||||| |||| || | || |||||| || |||||| ||||||||||||||||||||||||    
T  7165409 aacacttgcggttgctaccgacaaaagcaacgccaatttcaaaagcttatgaatcataacaaatgggtcgcacttgtttgtttccacaagttttgcacaa 7165508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 38417898 - 38418013
Alignment:
Q  39 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgt 137  Q
    |||||||||||  | || ||||| ||||  |||||||||||| |||||||  ||||||||| |  |||||||||||| ||||||| | || ||||| |||    
T  38417898 ttcacaacttttgtagcagaaaatacacaatcaacacttgcaattgctacatgcaagagcacaatcaacttcaaaagcttataaatcataacaaatatgt 38417997  T
Q  138 tgcacttatttgtttc 153  Q
    ||||||||||| ||||    
T  38417998 tgcacttatttatttc 38418013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 16639099 - 16639002
Alignment:
Q  56 tgaaaaaacacgttcaacacttgcagttgctac-cgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    |||| |||||||| |||||||||||||||  || || |||||||||  ||||||||||  ||||||| |  || |||||||||||||||||||||||||    
T  16639099 tgaagaaacacgtccaacacttgcagttgtcactcgtaagagcaaaatcaacttcaaacatttataatca-taacaaatgtgttgcacttatttgtttc 16639002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 34878582 - 34878498
Alignment:
Q  35 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagttta 118  Q
    ||||||||||||||| ||   ||||||| || ||||||||||||| ||| |||||| |||  | |||||||||||||||||||||    
T  34878582 actcttcacaacttttataattgaaaaagcatgttcaacacttgccgttactaccgacaaaggtaaagccaacttcaaaagttta 34878498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 20966385 - 20966312
Alignment:
Q  95 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaag 171  Q
    ||||||||||| |||||||  |||||||   |||||||||||||| |||||||| |||  |||||||||| ||||||    
T  20966385 agcaaagccaatttcaaaaacttataaa---tagcaaatgtgttgtacttatttatttttacaagttttgtacaaag 20966312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 4254 - 4311
Alignment:
Q  21 ttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 78  Q
    |||||||||| || ||||||||||  |||||| ||||| |||||||||||||||||||    
T  4254 ttgttacttatttgactcttcacatatttcatagctgagaaaacacgttcaacacttg 4311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 9895 - 9956
Alignment:
Q  92 aagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 153  Q
    |||||||||| |||||||||||  |||||||   || |||||||||||||||||||||||||    
T  9895 aagagcaaagtcaacttcaaaatcttataaaatataacaaatgtgttgcacttatttgtttc 9956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 3864 - 3807
Alignment:
Q  21 ttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 78  Q
    |||||||||| || ||||||||||  |||||| ||||| |||||||||||||||||||    
T  3864 ttgttacttatttgactcttcacatatttcatagctgagaaaacacgttcaacacttg 3807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 461296 - 461228
Alignment:
Q  9 taatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 78  Q
    |||||||| ||||||| || ||  ||||| |||||||||| ||| | |||||||||||||||||||||||    
T  461296 taatcatccattttgtcacataggttacttttcacaactt-catagttgaaaaaacacgttcaacacttg 461228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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