View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277R-Insertion-5 (Length: 871)
Name: NF1277R-Insertion-5
Description: NF1277R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277R-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 387 - 867
Target Start/End: Complemental strand, 46174887 - 46174403
Alignment:
| Q |
387 |
aaagcaaagagcgatagagggtggatgttcttgagattgagaattttgccattacaattgatttctgcattctgcgcttaaaccctacacaactgttttc |
486 |
Q |
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| T |
46174887 |
aaagcaaagagcgatagagggtggatgttcttgagattgagaattttgccattccaattgatttctgcattctgcgcttaaaccctacacaactgttttc |
46174788 |
T |
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| Q |
487 |
acttgactaaacccttgtgttctacatgaaaatgaaaaagtcttgaggagaaaatcataaataattacagtttttactatttttatgttaattcatctgt |
586 |
Q |
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| T |
46174787 |
acttgacaaaacccttgtgttgtacatgaaaatgaaaaagtcttgaggagaaaatcataaataattacagtttttactatttttatgttaattcatctgt |
46174688 |
T |
|
| Q |
587 |
tgacgtcattcaaatggaatacatttttcttttgagaaataaaaaacaacaaaaattatcaacaatagattaattcaaataataaggaatttaaagttgg |
686 |
Q |
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| T |
46174687 |
tgacgtcattcaaatggaatacatttttcttttgagaaataaaaaacaacaaaaattatcaacaatagattaattcaaataataaggaatttaaagttgg |
46174588 |
T |
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| Q |
687 |
attcaatgtctgattcttatgcatgaagaaattaactcaatgttcgatgctt---atgtatgaagaaattaacacaactaaacaaatgtgaagacttcac |
783 |
Q |
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| T |
46174587 |
attcaatgtctgattcttatgcatgaagaaattaactcaatgtctgatgcttatgatgtatgaagaaattaacacaactaaacaaatgtgaagacttcac |
46174488 |
T |
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| Q |
784 |
atttgtaatttgagcgaattctgatttaa-ccacttgggttggtccggtgatattgatttgggattttggattgtgtttttccgc |
867 |
Q |
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| T |
46174487 |
atttgtaatttgagcgaattctgatttaacccacttgggttggtccggtgatattgatttgggattttggattgtgtttttccgc |
46174403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 186 - 319
Target Start/End: Complemental strand, 46175088 - 46174955
Alignment:
| Q |
186 |
tgtttggaaattggattaccctgtaaacgccgggatcgaggccgttttcgaggggtcgatcgaagaaggttctttcggtttgttcgggtgagggagaagg |
285 |
Q |
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| T |
46175088 |
tgtttggaaattggattaccctgtaaacgccgggatcgaggccgttttcgaggggtcgatcgaagaaggttctttcggtttgttcgggtgagggagaagg |
46174989 |
T |
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| Q |
286 |
agctgctgagtcagcatcgtcgtaatcggaaagg |
319 |
Q |
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| T |
46174988 |
agctgctgagtcagcatcgtcgtaatcggaaagg |
46174955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 46175265 - 46175158
Alignment:
| Q |
9 |
caatggtcttcgattgttgcgaattccacctgttccgattgaaagcagagtaaccacagttccacttttcagtttcttctgcaacggtttttgtccagct |
108 |
Q |
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| T |
46175265 |
caatggtcttcgattgttgcgaattccacctgttccgattgaaagcagagtaaccacagttccacttttcagtttcttctgcaacggtttttgtccagct |
46175166 |
T |
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| Q |
109 |
ttacctac |
116 |
Q |
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|||||||| |
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| T |
46175165 |
ttacctac |
46175158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 813 - 847
Target Start/End: Original strand, 4412371 - 4412405
Alignment:
| Q |
813 |
ccacttgggttggtccggtgatattgatttgggat |
847 |
Q |
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| T |
4412371 |
ccacttgggttggtccgttgatattgatttgggat |
4412405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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