View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1277_high_10 (Length: 320)
Name: NF1277_high_10
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 468114 - 468408
Alignment:
| Q |
12 |
atgaataggtaaaagccatggcctggtattttgtttccattcttgaagttgaaacaaatattttgattcttaattcttcaggatattaagggactgttta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
468114 |
atgaataggtaaaagccatggcctggtattttgtttccattcttgaagttgaaacaaatattttgattcttaattcttcaggatattaagggactgttta |
468213 |
T |
|
| Q |
112 |
ctttgtgaaaaccnnnnnnnattttcatctcttaaaatttgtgttagttttgcttgttaataaggnnnnnnngtgactttgaagtgaacacttgtcttgc |
211 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
468214 |
ctttgtgaaaaactttttttattttcatttcttaaaatttgtgttagttttgcttgttaataagg-aaaaaagtgactttgaagtgaacacgtgtcttgc |
468312 |
T |
|
| Q |
212 |
attttagaaaacagtgaaaatgtcaacnnnnnnnnnnnnctgttttcattatttttgaaactgaatctttcctaactagcattttatcttctcttcatc |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
468313 |
attttagaaaacagtgaaaatgtcaac---aaaaaaaaactgttttcattatttttgaaactgaatctttcctaactagcattttatcttctcttcatc |
468408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 17233913 - 17233967
Alignment:
| Q |
251 |
ctgttttcattatttttgaaactgaatctttcctaactagcattttatcttctct |
305 |
Q |
| |
|
|||||||||||||||||| || || ||| |||||| ||||||| ||||||||||| |
|
|
| T |
17233913 |
ctgttttcattatttttggaaatgcatcattcctagctagcatattatcttctct |
17233967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University