View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_high_17 (Length: 257)
Name: NF1277_high_17
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 43727228 - 43727001
Alignment:
| Q |
1 |
catggacattggtggcttgaatttggatcagggctattagttggatattggccagcaaacttgtttagtcacttgagaagtcatgcaagcatggtacaat |
100 |
Q |
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| T |
43727228 |
catggacattggtggcttgaatttggatcagggctattagttggatattggccagcaaacttgtttagtcacttgagaagtcatgcaagcatggtacaat |
43727129 |
T |
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| Q |
101 |
ttggaggtgaaattgtgaattcacgttcaagaggctaccacactggcacacaaatgggaagtgggcatttttcaggagaaggttttagaaaagcagctta |
200 |
Q |
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| T |
43727128 |
ttggaggtgaaattgtgaattcacgttcaagaggctaccacactggcacacaaatgggaagtgggcatttttcaggagaaggttttagaaaagcagctta |
43727029 |
T |
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| Q |
201 |
ttttagaaacttacaagtagttgattgg |
228 |
Q |
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| T |
43727028 |
ttttagaaacttacaagtagttgattgg |
43727001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 36 - 228
Target Start/End: Complemental strand, 34758244 - 34758052
Alignment:
| Q |
36 |
attagttggatattggccagcaaacttgtttagtcacttgagaagtcatgcaagcatggtacaatttggaggtgaaattgtgaattcacgttcaagaggc |
135 |
Q |
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| T |
34758244 |
attagttggatactggccagcaaacatgttcagtcacttgaggagtcatgcaagcatggtacaatttggtggagagattgtgaatgctcgttctaagggt |
34758145 |
T |
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| Q |
136 |
taccacactggcacacaaatgggaagtgggcatttttcaggagaaggttttagaaaagcagcttattttagaaacttacaagtagttgattgg |
228 |
Q |
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| T |
34758144 |
taccacactgacactcaaatgggaagtggccattttgcagaagaaggatttaaaaaagcagcttattttagaaacttacaagtcattgattgg |
34758052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 14494745 - 14494704
Alignment:
| Q |
81 |
tcatgcaagcatggtacaatttggaggtgaaattgtgaattc |
122 |
Q |
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| T |
14494745 |
tcatgcaagtatggtacaatttggtggagaaattgtgaattc |
14494704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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