View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1277_high_18 (Length: 251)

Name: NF1277_high_18
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1277_high_18
NF1277_high_18
[»] chr1 (6 HSPs)
chr1 (123-243)||(23735925-23736045)
chr1 (124-243)||(23618955-23619074)
chr1 (124-243)||(23650300-23650419)
chr1 (136-238)||(23626472-23626574)
chr1 (136-238)||(23708198-23708300)
chr1 (1-114)||(23707653-23707766)
[»] chr3 (6 HSPs)
chr3 (1-105)||(54140244-54140348)
chr3 (124-243)||(52807008-52807127)
chr3 (124-184)||(54141120-54141180)
chr3 (55-114)||(52807614-52807673)
chr3 (186-243)||(52806922-52806979)
chr3 (1-45)||(52807771-52807815)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 23736045 - 23735925
Alignment:
Q  123 ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccattt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23736045 ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcaatccattt 23735946  T
Q  223 gatacattagcacttcatctc 243  Q
    |||||||||||||||||||||    
T  23735945 gatacattagcacttcatctc 23735925  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 23619074 - 23618955
Alignment:
Q  124 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23619074 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatgtg 23618975  T
Q  224 atacattagcacttcatctc 243  Q
    |||||||||||||| |||||    
T  23618974 atacattagcactttatctc 23618955  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 23650419 - 23650300
Alignment:
Q  124 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23650419 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatgtg 23650320  T
Q  224 atacattagcacttcatctc 243  Q
    |||||||||||||| |||||    
T  23650319 atacattagcactttatctc 23650300  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 23626472 - 23626574
Alignment:
Q  136 tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttgatacattagcac 235  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||    
T  23626472 tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctcttgtcccttcattccatgtgatacattagtac 23626571  T
Q  236 ttc 238  Q
    |||    
T  23626572 ttc 23626574  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 23708198 - 23708300
Alignment:
Q  136 tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttgatacattagcac 235  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||    
T  23708198 tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctcttgtcccttcattccatgtgatacattagtac 23708297  T
Q  236 ttc 238  Q
    |||    
T  23708298 ttc 23708300  T

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Target: chr1; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 23707653 - 23707766
Alignment:
Q  1 tgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatcaccgactttcactcatctgttctatcaccgacctcatccccatatcgtgt 100  Q
    |||||||| |||||||||||||| ||||||||||||||||||| ||||||||  | |||||||||||| |||||||||||||||  ||||||||||||||    
T  23707653 tgaagcaaattctaggagatttggaaccattaacaaacttcaactatatcactaaatttcactcatctattctatcaccgaccttgtccccatatcgtgt 23707752  T
Q  101 tgcatgtttgtttt 114  Q
    ||||||||| ||||    
T  23707753 tgcatgtttttttt 23707766  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 54140244 - 54140348
Alignment:
Q  1 tgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatcaccgactttcactcatctgttctatcaccgacctcatccccatatcgtgt 100  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| |||||  ||||||||||||| | |||||||||||||||||||||||||| ||||    
T  54140244 tgaagcaagttctagaagatttgaaaccattaacaaacctcaattctatcatggactttcactcatatattctatcaccgacctcatccccatattgtgt 54140343  T
Q  101 tgcat 105  Q
    |||||    
T  54140344 tgcat 54140348  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 52807127 - 52807008
Alignment:
Q  124 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 223  Q
    |||||||||  | ||||| ||||||||||||||||||||||||||||||| |||| ||||  |||||| ||||| | ||||||| |||||||||||| ||    
T  52807127 tgtgattttgaagctagaaacaatgtggtgactttgtgttgactgttagaaactagagcatgaatctatgaatgcagctcttgtgccttcattccatgtg 52807028  T
Q  224 atacattagcacttcatctc 243  Q
    ||||||||| | ||||||||    
T  52807027 atacattagtatttcatctc 52807008  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 54141120 - 54141180
Alignment:
Q  124 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcac 184  Q
    ||||||||  |||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  54141120 tgtgatttgggatctagatacaatgtggtggctttgtgtcgactgttagacactagagcac 54141180  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 52807673 - 52807614
Alignment:
Q  55 actttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt 114  Q
    |||||||||||| | |||| ||||||||||| |||||||||||||||||||||| |||||    
T  52807673 actttcactcatgtattctctcaccgacctcgtccccatatcgtgttgcatgttcgtttt 52807614  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 52806979 - 52806922
Alignment:
Q  186 aatctaagaatgtatctcttgtcccttcattccatttgatacattagcacttcatctc 243  Q
    |||||| ||||||| ||||||| |||||||||||| ||||||||||| ||||||||||    
T  52806979 aatctatgaatgtacctcttgtgccttcattccatgtgatacattagtacttcatctc 52806922  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52807815 - 52807771
Alignment:
Q  1 tgaagcaagttctaggagatttgaaaccattaacaaacttcaatt 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  52807815 tgaagcaagttctaggagatttgaaatcattaacaaacctcaatt 52807771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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