View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1277_high_2 (Length: 584)

Name: NF1277_high_2
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1277_high_2
NF1277_high_2
[»] scaffold0062 (11 HSPs)
scaffold0062 (303-576)||(41360-41634)
scaffold0062 (90-155)||(3972-4037)
scaffold0062 (88-152)||(70144-70208)
scaffold0062 (88-155)||(58010-58077)
scaffold0062 (88-155)||(71009-71076)
scaffold0062 (318-426)||(4062-4172)
scaffold0062 (400-455)||(4272-4327)
scaffold0062 (88-155)||(58897-58964)
scaffold0062 (30-72)||(40768-40810)
scaffold0062 (308-381)||(71085-71159)
scaffold0062 (309-381)||(58974-59047)
[»] chr2 (31 HSPs)
chr2 (88-152)||(15721587-15721651)
chr2 (88-155)||(15709098-15709165)
chr2 (88-155)||(15722452-15722519)
chr2 (158-214)||(36643973-36644029)
chr2 (88-155)||(15709985-15710052)
chr2 (150-214)||(4023230-4023295)
chr2 (158-214)||(23352796-23352852)
chr2 (158-214)||(32869952-32870008)
chr2 (158-214)||(40936953-40937009)
chr2 (158-212)||(3012741-3012795)
chr2 (160-214)||(13347705-13347759)
chr2 (308-381)||(15722528-15722602)
chr2 (161-214)||(7574561-7574614)
chr2 (161-214)||(9634328-9634381)
chr2 (309-381)||(15710062-15710135)
chr2 (161-214)||(28245853-28245906)
chr2 (161-214)||(41586560-41586613)
chr2 (162-214)||(11091252-11091304)
chr2 (158-214)||(13765526-13765582)
chr2 (158-214)||(25881670-25881726)
chr2 (161-203)||(16677810-16677852)
chr2 (253-282)||(2563740-2563769)
chr2 (253-282)||(3012852-3012881)
chr2 (161-214)||(5054734-5054787)
chr2 (253-282)||(8427588-8427617)
chr2 (161-214)||(35705619-35705672)
chr2 (158-214)||(10711850-10711906)
chr2 (253-285)||(13104511-13104543)
chr2 (257-285)||(13711093-13711121)
chr2 (158-214)||(34119541-34119597)
chr2 (158-214)||(37105764-37105820)
[»] chr8 (17 HSPs)
chr8 (88-155)||(18688823-18688890)
chr8 (88-155)||(18689709-18689776)
chr8 (160-214)||(45519682-45519736)
chr8 (309-381)||(18689785-18689858)
chr8 (162-214)||(23792983-23793035)
chr8 (158-214)||(30439395-30439451)
chr8 (158-214)||(36885377-36885433)
chr8 (479-563)||(37527029-37527113)
chr8 (158-214)||(37597364-37597420)
chr8 (159-214)||(36568087-36568142)
chr8 (491-544)||(7985146-7985199)
chr8 (253-282)||(11253549-11253578)
chr8 (157-214)||(45508659-45508716)
chr8 (158-214)||(12707276-12707332)
chr8 (257-285)||(13884171-13884199)
chr8 (158-213)||(29440411-29440467)
chr8 (253-285)||(40102055-40102087)
[»] chr7 (15 HSPs)
chr7 (158-213)||(43573432-43573487)
chr7 (158-214)||(7817762-7817818)
chr7 (486-560)||(3736349-3736423)
chr7 (158-214)||(4713699-4713756)
chr7 (160-213)||(42555691-42555744)
chr7 (158-214)||(11352863-11352919)
chr7 (158-214)||(41894041-41894097)
chr7 (161-214)||(21822491-21822544)
chr7 (253-282)||(37899219-37899248)
chr7 (165-214)||(44184455-44184504)
chr7 (158-214)||(10055521-10055577)
chr7 (253-285)||(23761091-23761123)
chr7 (158-214)||(28036870-28036926)
chr7 (253-285)||(29609871-29609903)
chr7 (253-285)||(30832913-30832945)
[»] chr6 (16 HSPs)
chr6 (158-214)||(754327-754383)
chr6 (160-214)||(1369486-1369540)
chr6 (163-213)||(5028160-5028210)
chr6 (158-214)||(3832589-3832645)
chr6 (158-214)||(13143271-13143327)
chr6 (158-214)||(18141190-18141246)
chr6 (162-214)||(31749491-31749543)
chr6 (161-213)||(32046825-32046877)
chr6 (163-208)||(6856057-6856102)
chr6 (165-213)||(2943561-2943609)
chr6 (158-214)||(6531069-6531125)
chr6 (253-285)||(9954580-9954612)
chr6 (254-282)||(31077828-31077856)
chr6 (256-284)||(32149522-32149550)
chr6 (257-285)||(32853155-32853183)
chr6 (158-214)||(35213450-35213506)
[»] chr3 (18 HSPs)
chr3 (158-213)||(3953364-3953419)
chr3 (158-214)||(6999296-6999352)
chr3 (158-214)||(37411001-37411057)
chr3 (158-214)||(41281610-41281666)
chr3 (160-214)||(52937309-52937363)
chr3 (160-214)||(55282581-55282635)
chr3 (161-214)||(46019588-46019641)
chr3 (158-214)||(51465803-51465859)
chr3 (158-212)||(23183541-23183595)
chr3 (158-214)||(9158761-9158818)
chr3 (253-282)||(34592099-34592128)
chr3 (158-214)||(36412249-36412306)
chr3 (253-282)||(44963825-44963854)
chr3 (157-213)||(48893472-48893529)
chr3 (257-285)||(23585147-23585175)
chr3 (257-285)||(23599970-23599998)
chr3 (257-285)||(32457766-32457794)
chr3 (158-214)||(46852021-46852077)
[»] chr1 (28 HSPs)
chr1 (158-207)||(43769752-43769801)
chr1 (158-214)||(33358047-33358103)
chr1 (158-214)||(35136970-35137026)
chr1 (158-214)||(50824867-50824923)
chr1 (159-214)||(5486022-5486077)
chr1 (158-213)||(48625003-48625057)
chr1 (158-214)||(29147762-29147819)
chr1 (158-214)||(29154904-29154960)
chr1 (158-214)||(50328030-50328086)
chr1 (253-284)||(6143717-6143748)
chr1 (158-197)||(48220033-48220072)
chr1 (158-213)||(50881999-50882054)
chr1 (157-198)||(4608301-4608342)
chr1 (253-282)||(15015434-15015463)
chr1 (253-282)||(42468628-42468657)
chr1 (160-197)||(48263160-48263197)
chr1 (253-282)||(49446804-49446833)
chr1 (158-214)||(6143809-6143865)
chr1 (158-214)||(8200201-8200257)
chr1 (158-214)||(8447862-8447918)
chr1 (158-214)||(10889935-10889991)
chr1 (158-214)||(13489788-13489844)
chr1 (479-515)||(24283061-24283097)
chr1 (257-285)||(29154813-29154841)
chr1 (158-214)||(32914961-32915017)
chr1 (158-214)||(34254240-34254296)
chr1 (257-285)||(37843443-37843471)
chr1 (158-214)||(48326094-48326149)
[»] chr5 (17 HSPs)
chr5 (158-214)||(15478784-15478840)
chr5 (158-214)||(34270453-34270509)
chr5 (158-214)||(41175595-41175651)
chr5 (160-214)||(15952936-15952990)
chr5 (158-194)||(189523-189559)
chr5 (158-214)||(8675322-8675378)
chr5 (158-214)||(10649561-10649617)
chr5 (158-214)||(43441864-43441920)
chr5 (158-213)||(189592-189647)
chr5 (486-561)||(18939532-18939607)
chr5 (158-213)||(43213948-43214003)
chr5 (162-214)||(1839238-1839290)
chr5 (257-285)||(2117635-2117663)
chr5 (157-213)||(3640085-3640141)
chr5 (158-214)||(19481071-19481127)
chr5 (253-285)||(31006091-31006123)
chr5 (158-214)||(34124747-34124803)
[»] chr4 (16 HSPs)
chr4 (158-213)||(14010007-14010062)
chr4 (158-214)||(17683467-17683523)
chr4 (158-214)||(22819775-22819831)
chr4 (158-214)||(26718494-26718550)
chr4 (158-214)||(26731122-26731178)
chr4 (158-213)||(38338811-38338866)
chr4 (160-214)||(46405865-46405919)
chr4 (158-214)||(53654638-53654695)
chr4 (158-214)||(1815890-1815946)
chr4 (158-214)||(12138979-12139035)
chr4 (253-285)||(27408186-27408218)
chr4 (257-285)||(29531617-29531645)
chr4 (158-214)||(31657772-31657828)
chr4 (158-214)||(39344869-39344925)
chr4 (158-213)||(42667332-42667388)
chr4 (158-214)||(47099146-47099202)
[»] scaffold0519 (1 HSPs)
scaffold0519 (253-282)||(11816-11845)
[»] scaffold0100 (1 HSPs)
scaffold0100 (253-282)||(44810-44839)
[»] scaffold0532 (1 HSPs)
scaffold0532 (158-214)||(11090-11146)
[»] scaffold0141 (1 HSPs)
scaffold0141 (158-214)||(12058-12114)
[»] scaffold0041 (1 HSPs)
scaffold0041 (257-285)||(34440-34468)
[»] scaffold0036 (1 HSPs)
scaffold0036 (253-285)||(18036-18068)


Alignment Details
Target: scaffold0062 (Bit Score: 203; Significance: 1e-110; HSPs: 11)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 303 - 576
Target Start/End: Original strand, 41360 - 41634
Alignment:
Q  303 agtggaggtaaaatatataagttgataacgtgtagaat-taaatcgtagttgtctttcaatttgttattcctcaaataaagtcatggccttttaatattt 401  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  41360 agtggaggtaaaatatataagttgataacgtgtagaatataaaccgtagttgtctttcaatttattatttctcaaataaagtcatggccttttaatattt 41459  T
Q  402 attattattacaagtttcattgagtaatcaataataaaattgcaaataattctaagcatagctgaattgatagatggtgacatatcatattacgttaatc 501  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||    
T  41460 attattattacaagtttcattgagtaatgaataataaaattgcaaataattctaagcatagctgaattgatagatggtgacagatcattttacgttattc 41559  T
Q  502 ttaacatgttttttagtctaatttagcaggttttacgagcaaaccataagactattagagcactttgcctatgat 576  Q
    ||||||| ||||| |||||||||||| ||||||||  ||||||||  | ||||||||||||||||||| ||||||    
T  41560 ttaacatatttttcagtctaatttagtaggttttaacagcaaaccggaggactattagagcactttgcatatgat 41634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 3972 - 4037
Alignment:
Q  90 attatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataattttt 155  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3972 attatgaaatttaaatataattgatattaatctttaaaatatctacaaagtaaatatataattttt 4037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 70144 - 70208
Alignment:
Q  88 acattatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataatt 152  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  70144 acattatgcaaattaaatataattgatattaatctttaaaatatctacaaagtaaatatataatt 70208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 58010 - 58077
Alignment:
Q  88 acattatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataattttt 155  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  58010 acattatgcaaattaaatataattgatattaatctttaaaatatctacgaagtaaatatataattttt 58077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 71009 - 71076
Alignment:
Q  88 acattatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataattttt 155  Q
    ||||||||||||||||||||||||||  |||||||||||||||||  |||||||||||||| ||||||    
T  71009 acattatgcaatttaaatataattgaagttaatctttaaaatatcaacaaagtaaatatatcattttt 71076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 426
Target Start/End: Original strand, 4062 - 4172
Alignment:
Q  318 tataagttgataacgtgtagaat-taaatcgta-gttgtctttcaatttgttattcctcaaataaagtcatggccttttaatatttattattattacaag 415  Q
    ||||| ||||||||||||| ||| ||||| ||  ||||||||||||||| ||||| |||| |||||||||||| ||| || || ||||| |||| |||||    
T  4062 tataatttgataacgtgtaaaatataaatggtttgttgtctttcaatttattatttctcacataaagtcatggtcttctattagttattgttatcacaag 4161  T
Q  416 tttcattgagt 426  Q
    |||||||||||    
T  4162 tttcattgagt 4172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 455
Target Start/End: Original strand, 4272 - 4327
Alignment:
Q  400 ttattattattacaagtttcattgagtaatcaataataaaattgcaaataattcta 455  Q
    ||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||    
T  4272 ttattattactacaagtttcattgagtaatgaataataaaattgtaaataagtcta 4327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 58897 - 58964
Alignment:
Q  88 acattatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataattttt 155  Q
    ||||||||||||||||||||||||||  ||  |||||||||||||  |||||||||||||| ||||||    
T  58897 acattatgcaatttaaatataattgaagtttttctttaaaatatcgacaaagtaaatatatcattttt 58964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 40768 - 40810
Alignment:
Q  30 ctaacaaccatagtgcaaacataaaagtctgaccaaagatcat 72  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  40768 ctaacaaccatagtgcgaacataaaagtctgaccaatgatcat 40810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 381
Target Start/End: Original strand, 71085 - 71159
Alignment:
Q  308 aggtaaaatatataagttgataacgtgtagaat-taaatcgtagttgtctttcaatttgttattcctcaaataaa 381  Q
    ||||||||||||||| | ||||||||||| ||| ||||||| ||||||||||||| || ||||| |||| |||||    
T  71085 aggtaaaatatataattggataacgtgtaaaatataaatcgaagttgtctttcaaattattatttctcacataaa 71159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 58974 - 59047
Alignment:
Q  309 ggtaaaatatataagttgataacgtgtagaat-taaatcgtagttgtctttcaatttgttattcctcaaataaa 381  Q
    |||||||||||||| | ||||||||||| ||| ||||||| ||||||||||||| || ||||| |||| |||||    
T  58974 ggtaaaatatataattggataacgtgtaaaatataaatcgaagttgtctttcaaattattatttctcacataaa 59047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 15721587 - 15721651
Alignment:
Q  88 acattatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataatt 152  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15721587 acattatgcaaattaaatataattgatattaatctttaaaatatctacaaagtaaatatataatt 15721651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 15709098 - 15709165
Alignment:
Q  88 acattatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataattttt 155  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  15709098 acattatgcaaattaaatataattgatattaatctttaaaatatctacgaagtaaatatataattttt 15709165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 15722452 - 15722519
Alignment:
Q  88 acattatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataattttt 155  Q
    ||||||||||||||||||||||||||  |||||||||||||||||  |||||||||||||| ||||||    
T  15722452 acattatgcaatttaaatataattgaagttaatctttaaaatatcaacaaagtaaatatatcattttt 15722519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 36643973 - 36644029
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||||||||||||||||||||  |||||||||||||||    
T  36643973 aggagtgttatttgaacaaccatttggttgacaatttatgggacaaccataatttac 36644029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 15709985 - 15710052
Alignment:
Q  88 acattatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataattttt 155  Q
    ||||||||||||||||||||||||||  ||  |||||||||||||  |||||||||||||| ||||||    
T  15709985 acattatgcaatttaaatataattgaagtttttctttaaaatatcgacaaagtaaatatatcattttt 15710052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 4023230 - 4023295
Alignment:
Q  150 atttttgt-aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||| ||||||||||||| || || ||||||||||||||||||||| |||| ||||||||||    
T  4023230 atttttgtcaggagtgttatttcaacaaccatttggttgacaatttatgagacaatcataatttac 4023295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 23352796 - 23352852
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| |||||  |||||||||||||||    
T  23352796 aggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataatttac 23352852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 32870008 - 32869952
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||||||||||||||||| ||  |||||||||||||||    
T  32870008 aggagtgttatttgaacaaccatttggttgacaatttttgggacaaccataatttac 32869952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 40936953 - 40937009
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||||||||| ||||| | ||||||||||||  |||||||||||||||    
T  40936953 aggagtgttatttgaataaccatttagctgacaatttatgtgacaaccataatttac 40937009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 3012741 - 3012795
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattt 212  Q
    |||||||||||||||| || |||||||||||||| |||||  |||||||||||||    
T  3012741 aggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataattt 3012795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 13347705 - 13347759
Alignment:
Q  160 gagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||| || ||||||||||||||||| ||  |||||||||||||||    
T  13347705 gagtgttatttgaacaaccatttggttgacaatttttgggacaaccataatttac 13347759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 381
Target Start/End: Original strand, 15722528 - 15722602
Alignment:
Q  308 aggtaaaatatataagttgataacgtgtagaat-taaatcgtagttgtctttcaatttgttattcctcaaataaa 381  Q
    ||||||||||||||| | ||||||||||| ||| ||||||| ||||||||||||| || ||||| |||| |||||    
T  15722528 aggtaaaatatataattggataacgtgtaaaatataaatcgaagttgtctttcaaattattatttctcacataaa 15722602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 7574614 - 7574561
Alignment:
Q  161 agtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||| || ||||||||||||||||| || |||||| |||||||||    
T  7574614 agtgttatttgaacaaccatttggttgacaatttttggaacaactataatttac 7574561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 9634328 - 9634381
Alignment:
Q  161 agtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||| ||||||||||||||||| || |  ||||||||||||||||    
T  9634328 agtgttatttgaacaatcatttggttgacaactttttgaacaaccataatttac 9634381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 15710062 - 15710135
Alignment:
Q  309 ggtaaaatatataagttgataacgtgtagaat-taaatcgtagttgtctttcaatttgttattcctcaaataaa 381  Q
    |||||||||||||| | ||||||||||| ||| ||||||| ||||||||||||| || ||||| |||| |||||    
T  15710062 ggtaaaatatataattggataacgtgtaaaatataaatcgaagttgtctttcaaattattatttctcacataaa 15710135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 28245906 - 28245853
Alignment:
Q  161 agtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||| || |||||||||||||| || |||||||||| ||||||||    
T  28245906 agtgttatttgaacaaccatttggttgacaacttttgaaacaaccttaatttac 28245853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 41586560 - 41586613
Alignment:
Q  161 agtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||||||||||||    
T  41586560 agtgttatttgaacaaccatttagttgacaacttatggaacaaccataatttac 41586613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 11091252 - 11091304
Alignment:
Q  162 gtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||| ||  |||||||||| ||||||||| |||||||||||||||    
T  11091252 gtgttatttgaacaacaatttggttgataatttatgagacaaccataatttac 11091304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 13765582 - 13765526
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  13765582 aggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttac 13765526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 25881726 - 25881670
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||| ||||||||| || |||||||||||||| || ||||||| |||||||||||    
T  25881726 aggagtcttatttgaacaaccatttggttgacaacttttgaaacagccataatttac 25881670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 16677852 - 16677810
Alignment:
Q  161 agtgttatttgaataatcatttggttgacaatttatgaaacaa 203  Q
    ||||||||||||| ||||||||||||||||| || ||||||||    
T  16677852 agtgttatttgaacaatcatttggttgacaacttttgaaacaa 16677810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 2563769 - 2563740
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  2563769 tgtaagtatgagagagaaagttgtcacaaa 2563740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 3012852 - 3012881
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  3012852 tgtaagtatgagagagaaagttgtcacaaa 3012881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 5054787 - 5054734
Alignment:
Q  161 agtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||||||  ||||||||||||| |||||  ||||| |||||||||    
T  5054787 agtgttatttgaataactatttggttgacaacttatgtgacaacaataatttac 5054734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 8427617 - 8427588
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  8427617 tgtaagtatgagagagaaagttgtcacaaa 8427588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 35705672 - 35705619
Alignment:
Q  161 agtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||| ||||| || | |||||||||||  ||||||||||||||||    
T  35705672 agtgttatttgaacaatcaatttggtgacaatttatttaacaaccataatttac 35705619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 10711906 - 10711850
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| ||  |||||||||| || || |||||||| ||||||||||    
T  10711906 aggagtgttatttgaacaactatttggttgataacttttgaaacaatcataatttac 10711850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 13104543 - 13104511
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||| ||||||    
T  13104543 tgtaagtatgagagagaaagttgtcaaaaagtt 13104511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 13711121 - 13711093
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  13711121 agtatgagagagaaagttgtcacaaagtt 13711093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 34119541 - 34119597
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||| ||||||| || |||||||||||||| |||||| |||  ||||||||||    
T  34119541 aggagtgtaatttgaacaaccatttggttgacaacttatgagacactcataatttac 34119597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 37105820 - 37105764
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| ||  ||||||||||||| || ||  |||||||||||||||    
T  37105820 aggagtgttatttgaacaactatttggttgacaacttttgtgacaaccataatttac 37105764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 18688823 - 18688890
Alignment:
Q  88 acattatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataattttt 155  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  18688823 acattatgcaaattaaatataattgatattaatctttaaaatatctacgaagtaaatatataattttt 18688890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 18689709 - 18689776
Alignment:
Q  88 acattatgcaatttaaatataattgatattaatctttaaaatatctgcaaagtaaatatataattttt 155  Q
    ||||||||||||||||||||||||||  ||  |||||||||||||  |||||||||||||| ||||||    
T  18689709 acattatgcaatttaaatataattgaagtttttctttaaaatatcgacaaagtaaatatatcattttt 18689776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 45519736 - 45519682
Alignment:
Q  160 gagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||| || ||||||||||||||| ||||| | |||||||||||||    
T  45519736 gagtgttatttgaacaaccatttggttgacaatgtatgagataaccataatttac 45519682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 18689785 - 18689858
Alignment:
Q  309 ggtaaaatatataagttgataacgtgtagaat-taaatcgtagttgtctttcaatttgttattcctcaaataaa 381  Q
    |||||||||||||| | ||||||||||| ||| ||||||| ||||||||||||| || ||||| |||| |||||    
T  18689785 ggtaaaatatataattggataacgtgtaaaatataaatcgaagttgtctttcaaattattatttctcacataaa 18689858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 23792983 - 23793035
Alignment:
Q  162 gtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||| || || ||||||||||||||||||||| ||||| |||||||||    
T  23792983 gtgttatttcaacaaccatttggttgacaatttatgagacaactataatttac 23793035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 30439395 - 30439451
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||||||||||| || |||||  |||||||||||||||    
T  30439395 aggagtgttatttgaacaaccatttggttgataacttatgtgacaaccataatttac 30439451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 36885377 - 36885433
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||| ||||| |||||  |||||||||||||||    
T  36885377 aggagtgttatttgaacaaccatttggtggacaacttatgggacaaccataatttac 36885433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 563
Target Start/End: Original strand, 37527029 - 37527113
Alignment:
Q  479 tgacatatcatattacgttaatcttaacatgttttttagtctaatttagcaggttttacgagcaaaccataagactattagagca 563  Q
    ||||||||||| |||| ||| | ||||||| ||||| |||||| ||||| ||||||||| ||||||| | | || ||||||||||    
T  37527029 tgacatatcatcttaccttatttttaacatttttttcagtctattttagtaggttttaccagcaaactagatgagtattagagca 37527113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 37597420 - 37597364
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| |||||| | |||||||| |||| | |||||||||||||||    
T  37597420 aggagtgttatttgaacaatcatatagttgacaacttataagacaaccataatttac 37597364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 36568142 - 36568087
Alignment:
Q  159 ggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||||| || |||||| ||||||| |||||  |||||||||||||||    
T  36568142 ggagtgttatttgaacaaccatttgattgacaacttatgggacaaccataatttac 36568087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 544
Target Start/End: Complemental strand, 7985199 - 7985146
Alignment:
Q  491 ttacgttaatcttaacatgttttttagtctaatttagcaggttttacgagcaaa 544  Q
    |||||||| ||||||||||| ||| |||| ||||||| ||||||||| ||||||    
T  7985199 ttacgttattcttaacatgtatttcagtcaaatttagtaggttttaccagcaaa 7985146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 11253549 - 11253578
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  11253549 tgtaagtatgagagagaaagttgtcacaaa 11253578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 45508716 - 45508659
Alignment:
Q  157 taggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||||||| ||  |||| ||||| ||||||||  |||||||||||||||    
T  45508716 taggagtgttatttgaacaacaatttagttgataatttatgggacaaccataatttac 45508659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 12707332 - 12707276
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||  | |||||  |||||||||||||||    
T  12707332 aggagtgttatttgaacaaccatttggttgagcacttatgggacaaccataatttac 12707276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 13884171 - 13884199
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  13884171 agtatgagagagaaagttgtcacaaagtt 13884199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 29440411 - 29440467
Alignment:
Q  158 aggagtgttatttgaataatca-tttggttgacaatttatgaaacaaccataattta 213  Q
    |||||||||||||||| ||||| |||| ||||||||||| |  ||||||||||||||    
T  29440411 aggagtgttatttgaacaatcaatttgattgacaatttacgtgacaaccataattta 29440467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 40102087 - 40102055
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||| ||||||    
T  40102087 tgtaagtatgagagagaaagttgtcaaaaagtt 40102055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 43573432 - 43573487
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  43573432 aggagtgttatttgaacaatcatttggttgacaatttttgagacaaccataattta 43573487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 7817818 - 7817762
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| |||||  |||||||||||||||    
T  7817818 aggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccataatttac 7817762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 560
Target Start/End: Complemental strand, 3736423 - 3736349
Alignment:
Q  486 tcatattacgttaatcttaacatgttttttagtctaatttagcaggttttacgagcaaaccataagactattaga 560  Q
    |||| |||||||| ||||| |||||||||||||||| || || ||||||||| |||||| |||| || |||||||    
T  3736423 tcatcttacgttattcttagcatgttttttagtctatttcagtaggttttaccagcaaagcataggattattaga 3736349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 4713756 - 4713699
Alignment:
Q  158 aggagtgttatttgaataatca-tttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||||||||| || |||||||||||| |||||  |||||||||||||||    
T  4713756 aggagtgttatttgaataaccaatttggttgacaacttatgtgacaaccataatttac 4713699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 42555744 - 42555691
Alignment:
Q  160 gagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    |||||||||||||| || |||||||||||||| || ||| ||||||||||||||    
T  42555744 gagtgttatttgaacaaccatttggttgacaacttttgagacaaccataattta 42555691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 11352863 - 11352919
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  11352863 aggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttac 11352919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 41894097 - 41894041
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||||| ||||||||||| ||  |||||||||||||||    
T  41894097 aggagtgttatttgaacaaccatttagttgacaatttttgtgacaaccataatttac 41894041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 21822491 - 21822544
Alignment:
Q  161 agtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||| || ||||| |||||||| || | |||||||||||||||||    
T  21822491 agtgttatttgaacaaccatttagttgacaacttttaaaacaaccataatttac 21822544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 37899219 - 37899248
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  37899219 tgtaagtatgagagagaaagttgtcacaaa 37899248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 44184455 - 44184504
Alignment:
Q  165 ttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||| || |||||||||||||| || || ||||||||||||||||    
T  44184455 ttatttgaacaaccatttggttgacaacttttggaacaaccataatttac 44184504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 10055521 - 10055577
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||| || || |||||||||||||| |||||  ||||| |||||||||    
T  10055521 aggagtgttatttaaacaaccatttggttgacaacttatgggacaactataatttac 10055577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 23761123 - 23761091
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||| ||||||    
T  23761123 tgtaagtatgagagagaaagttgtcaaaaagtt 23761091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 28036926 - 28036870
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||| ||||| || |||||||||||||| || ||  |||||||||||||||    
T  28036926 aggagtgttaattgaacaaccatttggttgacaacttttgggacaaccataatttac 28036870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 29609871 - 29609903
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||| ||||||    
T  29609871 tgtaagtatgagagagaaagttgtcaaaaagtt 29609903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 30832913 - 30832945
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||| ||||||    
T  30832913 tgtaagtatgagagagaaagttgtcaaaaagtt 30832945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 754327 - 754383
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||||||||||||||||| || ||||||||||||||||    
T  754327 aggagtgttatttgaacaaccatttggttgacaatttttggaacaaccataatttac 754383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 1369540 - 1369486
Alignment:
Q  160 gagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||| || ||||||||||||||||| ||| |||||||||||||||    
T  1369540 gagtgttatttgaacaaccatttggttgacaatttttgagacaaccataatttac 1369486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 5028160 - 5028210
Alignment:
Q  163 tgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    ||||||||||| |||||||||||||| || |||||| ||||||||||||||    
T  5028160 tgttatttgaacaatcatttggttgataacttatgagacaaccataattta 5028210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 3832645 - 3832589
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||| ||||||| |||||  |||||||||||||||    
T  3832645 aggagtgttatttgaacaaccatttgattgacaacttatgggacaaccataatttac 3832589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 13143271 - 13143327
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  13143271 aggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttac 13143327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 18141190 - 18141246
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  18141190 aggagtgttatttgaacaaccatttggttgacaacttttgtgacaaccataatttac 18141246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 31749543 - 31749491
Alignment:
Q  162 gtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||| ||||||||| ||||||| ||| || |||||||||||||||    
T  31749543 gtgttatttgaacaatcatttgattgacaacttaagagacaaccataatttac 31749491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 32046877 - 32046825
Alignment:
Q  161 agtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    ||||||||||||| || |||||||||||||| |||||  ||||||||||||||    
T  32046877 agtgttatttgaacaaccatttggttgacaacttatgggacaaccataattta 32046825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 6856057 - 6856102
Alignment:
Q  163 tgttatttgaataatcatttggttgacaatttatgaaacaaccata 208  Q
    ||||||||||| || ||||||||||||||||||||| |||| ||||    
T  6856057 tgttatttgaacaaccatttggttgacaatttatgagacaaacata 6856102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 2943609 - 2943561
Alignment:
Q  165 ttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    ||||||||| || ||||||||| ||||||||| ||||||||||| ||||    
T  2943609 ttatttgaacaaccatttggttaacaatttataaaacaaccatatttta 2943561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 6531069 - 6531125
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||||||||||| || | |||  |||||||||||||||    
T  6531069 aggagtgttatttgaacaaccatttggttgataactaatgggacaaccataatttac 6531125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 9954612 - 9954580
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||| ||||||    
T  9954612 tgtaagtatgagagagaaagttgtcaaaaagtt 9954580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 31077856 - 31077828
Alignment:
Q  254 gtaagtatgagagagaaagttgtcacaaa 282  Q
    |||||||||||||||||||||||||||||    
T  31077856 gtaagtatgagagagaaagttgtcacaaa 31077828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 32149550 - 32149522
Alignment:
Q  256 aagtatgagagagaaagttgtcacaaagt 284  Q
    |||||||||||||||||||||||||||||    
T  32149550 aagtatgagagagaaagttgtcacaaagt 32149522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 32853155 - 32853183
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  32853155 agtatgagagagaaagttgtcacaaagtt 32853183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 35213450 - 35213506
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||| ||||||||||    
T  35213450 aggagtgttatttgaacaaccatttggttgacaacttttgggacaatcataatttac 35213506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 3953364 - 3953419
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||| |||||||||    
T  3953364 aggagtgttatttgaacaatcatttggttgacaatttttgagacaatcataattta 3953419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 6999352 - 6999296
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| |||||  |||||||||||||||    
T  6999352 aggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataatttac 6999296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 37411057 - 37411001
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||||| ||||||||  |||||||||||||||||||||    
T  37411057 aggagtgttatttgaacaaccatttagttgacaacctatgaaacaaccataatttac 37411001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 41281610 - 41281666
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||| | |||||||    
T  41281610 aggagtgttatttgaacaatcatttggttgacaacttatggaacaactaaaatttac 41281666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 52937363 - 52937309
Alignment:
Q  160 gagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||| || ||||||||||| ||||| ||| |||||||||||||||    
T  52937363 gagtgttatttgaacaaccatttggttgataatttttgagacaaccataatttac 52937309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 55282581 - 55282635
Alignment:
Q  160 gagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||  ||||||||    
T  55282581 gagtgttatttgaataaccatttggttgacaacttatgagacaactgtaatttac 55282635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 46019641 - 46019588
Alignment:
Q  161 agtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||| || |||||||||||||| || || ||||||||||||||||    
T  46019641 agtgttatttgaacaaccatttggttgacaacttttggaacaaccataatttac 46019588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 51465803 - 51465859
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  51465803 aggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttac 51465859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 23183595 - 23183541
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattt 212  Q
    |||||||||||||||| || |||||| ||||||| |||| | |||||||||||||    
T  23183595 aggagtgttatttgaacaaccatttgattgacaacttattatacaaccataattt 23183541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 9158761 - 9158818
Alignment:
Q  158 aggagtgttatttgaataa-tcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || | ||||||||||||| |||||  |||||||||||||||    
T  9158761 aggagtgttatttgaacaactaatttggttgacaacttatgtgacaaccataatttac 9158818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 34592128 - 34592099
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  34592128 tgtaagtatgagagagaaagttgtcacaaa 34592099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 36412306 - 36412249
Alignment:
Q  158 aggagtgttatttgaataatcatttgg-ttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||||||| ||||||| |||||  |||||||||||||||    
T  36412306 aggagtgttatttgaacaaccatttggtttgacaacttatgggacaaccataatttac 36412249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 44963825 - 44963854
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  44963825 tgtaagtatgagagagaaagttgtcacaaa 44963854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 48893529 - 48893472
Alignment:
Q  157 taggagtgttatttgaataatcatttggt-tgacaatttatgaaacaaccataattta 213  Q
    ||||||||||||||||| | ||||||||  |||||||||||| |||||||| ||||||    
T  48893529 taggagtgttatttgaacattcatttggggtgacaatttatgtaacaaccacaattta 48893472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 23585175 - 23585147
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  23585175 agtatgagagagaaagttgtcacaaagtt 23585147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 23599998 - 23599970
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  23599998 agtatgagagagaaagttgtcacaaagtt 23599970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 32457766 - 32457794
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  32457766 agtatgagagagaaagttgtcacaaagtt 32457794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 46852021 - 46852077
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||| ||||||||||    
T  46852021 aggagtgttatttgaacaaccatttggttgacaacttttgggacaatcataatttac 46852077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 43769801 - 43769752
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccat 207  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||||||    
T  43769801 aggaatgttatttgaataatcatttggttgacaacttatgagacaaccat 43769752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 33358047 - 33358103
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| |||||  |||||||||||||||    
T  33358047 aggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccataatttac 33358103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 35137026 - 35136970
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| |||||||||||||||||||| |   |||||||||||||||    
T  35137026 aggagtgttatttgaacaatcatttggttgacaatttttaggacaaccataatttac 35136970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 50824923 - 50824867
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||| ||||| |||||| |||||||||||||||    
T  50824923 aggagtgttatttgaacaaccatttggtggacaacttatgatacaaccataatttac 50824867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 5486077 - 5486022
Alignment:
Q  159 ggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||||| ||||||||  ||||||| |||| |||||||||||||||||    
T  5486077 ggagtgttatttgaacaatcatttacttgacaacttataaaacaaccataatttac 5486022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 48625057 - 48625003
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    |||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||    
T  48625057 aggagtgttatttgaa-aattatttgattgacaacttatgaaacaaccataattta 48625003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 29147762 - 29147819
Alignment:
Q  158 aggagtgttatttgaataatca-tttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| ||||| ||||||||| ||||||||  |||||||||||||||    
T  29147762 aggagtgttatttgaacaatcaatttggttgataatttatgtgacaaccataatttac 29147819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 29154960 - 29154904
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| |||||  ||||| |||||||||    
T  29154960 aggagtgttatttgaacaaccatttggttgacaacttatgggacaacgataatttac 29154904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 50328030 - 50328086
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  50328030 aggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttac 50328086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 284
Target Start/End: Complemental strand, 6143748 - 6143717
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaagt 284  Q
    ||||||||||||||||||||||||||||||||    
T  6143748 tgtaagtatgagagagaaagttgtcacaaagt 6143717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 48220033 - 48220072
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatg 197  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  48220033 aggagtgttatttgaacaatcatttggttgacaacttatg 48220072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 50881999 - 50882054
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    |||||||||||||||| || |||||| |||||||||||||  |||| |||||||||    
T  50881999 aggagtgttatttgaacaaccatttgattgacaatttatgtgacaatcataattta 50882054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 4608342 - 4608301
Alignment:
Q  157 taggagtgttatttgaataatcatttggttgacaatttatga 198  Q
    ||||||||||||||||| || ||||||||||||||| |||||    
T  4608342 taggagtgttatttgaacaaccatttggttgacaatctatga 4608301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 15015463 - 15015434
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  15015463 tgtaagtatgagagagaaagttgtcacaaa 15015434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 42468657 - 42468628
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  42468657 tgtaagtatgagagagaaagttgtcacaaa 42468628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 48263160 - 48263197
Alignment:
Q  160 gagtgttatttgaataatcatttggttgacaatttatg 197  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  48263160 gagtgttatttgaacaatcatttgattgacaatttatg 48263197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 49446804 - 49446833
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  49446804 tgtaagtatgagagagaaagttgtcacaaa 49446833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 6143865 - 6143809
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||| ||||||||||| |||||||||||||||||  | | | |||||||||||||||    
T  6143865 aggattgttatttgaacaatcatttggttgacaacatttaagacaaccataatttac 6143809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 8200257 - 8200201
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| |  | |||||||||||| |||||  |||||||||||||||    
T  8200257 aggagtgttatttgaacagccttttggttgacaacttatgggacaaccataatttac 8200201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 8447918 - 8447862
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| |||||||| ||||| || |||||  |||| ||||||||||    
T  8447918 aggagtgttatttgaacaatcatttagttgataacttatgtgacaatcataatttac 8447862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 10889935 - 10889991
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| ||  ||||||||||||| || ||  |||||||||||||||    
T  10889935 aggagtgttatttgaacaactatttggttgacaacttttgtgacaaccataatttac 10889991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 13489844 - 13489788
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| ||  ||||||||||||| || ||  |||||||||||||||    
T  13489844 aggagtgttatttgaacaactatttggttgacaacttctgggacaaccataatttac 13489788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Complemental strand, 24283097 - 24283061
Alignment:
Q  479 tgacatatcatattacgttaatcttaacatgtttttt 515  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  24283097 tgacatatcatcttacgttattcttaacatgtttttt 24283061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 29154841 - 29154813
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  29154841 agtatgagagagaaagttgtcacaaagtt 29154813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 32914961 - 32915017
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| ||  ||||||||||||| || || ||||| ||||||||||    
T  32914961 aggagtgttatttgaacaactatttggttgacaacttttggaacaatcataatttac 32915017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 34254240 - 34254296
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| |||||||||||||| || || ||  ||||| |||||||||    
T  34254240 aggagtgttatttgaacaatcatttggttgataacttttgggacaactataatttac 34254296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 37843443 - 37843471
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  37843443 agtatgagagagaaagttgtcacaaagtt 37843471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 48326149 - 48326094
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  48326149 aggagtgttatttgaacaaccatttggttgacaacttttg-gacaaccataatttac 48326094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 15478840 - 15478784
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| ||  |||||||||||||||| || ||||||||||||||||    
T  15478840 aggagtgttatttgaacaactatttggttgacaatttttggaacaaccataatttac 15478784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 34270509 - 34270453
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||| |||||||||||||||    
T  34270509 aggagtgttatttgaacaaccatttggttgacaaattttgagacaaccataatttac 34270453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 41175595 - 41175651
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| |||||  |||||||||||||||    
T  41175595 aggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccataatttac 41175651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 15952936 - 15952990
Alignment:
Q  160 gagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||| || |||||||||||||| |||||  |||||||||||||||    
T  15952936 gagtgttatttgaacaaccatttggttgacaacttatgtgacaaccataatttac 15952990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 189523 - 189559
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaattt 194  Q
    |||||||||||||||| ||||||||||||||||||||    
T  189523 aggagtgttatttgaacaatcatttggttgacaattt 189559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 8675322 - 8675378
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  8675322 aggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttac 8675378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 10649617 - 10649561
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  10649617 aggagtgttatttgaacaaccatttggttgacaacttttgtgacaaccataatttac 10649561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 43441920 - 43441864
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || | | |||||||||||||||    
T  43441920 aggagtgttatttgaacaaccatttggttgacaacttttaagacaaccataatttac 43441864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 189592 - 189647
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    |||||||||||||||| ||||||||||||||||| || ||  |||| |||||||||    
T  189592 aggagtgttatttgaacaatcatttggttgacaacttttgggacaatcataattta 189647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 561
Target Start/End: Complemental strand, 18939607 - 18939532
Alignment:
Q  486 tcatattacgttaatcttaacatgttttttagtctaatttagcaggttttacgagcaaaccataagactattagag 561  Q
    |||| |||||||| ||||||||||||||| ||||| ||| || | ||||||| |||||| |||| || ||||||||    
T  18939607 tcatcttacgttattcttaacatgtttttcagtcttattaagtaagttttaccagcaaaacatatgagtattagag 18939532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 43213948 - 43214003
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    |||||||||||||||| || |||||||||||||| || | ||||||| ||||||||    
T  43213948 aggagtgttatttgaacaaccatttggttgacaacttttaaaacaactataattta 43214003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 1839238 - 1839290
Alignment:
Q  162 gtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||| |  ||||||||||| ||||||||  |||||||||||||||    
T  1839238 gtgttatttgaaaagccatttggttgataatttatgggacaaccataatttac 1839290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 2117635 - 2117663
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  2117635 agtatgagagagaaagttgtcacaaagtt 2117663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 3640085 - 3640141
Alignment:
Q  157 taggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    |||||||||||||||||  | ||||| |||||||| |||||  ||||||||||||||    
T  3640085 taggagtgttatttgaactaccatttagttgacaacttatgtgacaaccataattta 3640141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 19481071 - 19481127
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| |||||||||||||| || || ||  ||||| |||||||||    
T  19481071 aggagtgttatttgaacaatcatttggttgataacttttgggacaactataatttac 19481127  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 31006123 - 31006091
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||| ||||||    
T  31006123 tgtaagtatgagagagaaagttgtcaaaaagtt 31006091  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 34124803 - 34124747
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||  |||||||||| | | |||||||||||||||    
T  34124803 aggagtgttatttgaacaaccatttaattgacaatttttaagacaaccataatttac 34124747  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 14010007 - 14010062
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    |||||||||||||||||||| ||||||||||||| || ||  ||||||||||||||    
T  14010007 aggagtgttatttgaataattatttggttgacaacttttgggacaaccataattta 14010062  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 17683523 - 17683467
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  17683523 aggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttac 17683467  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 22819831 - 22819775
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || |||||||||||||| || ||  |||||||||||||||    
T  22819831 aggagtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttac 22819775  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 26718550 - 26718494
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||||||||| ||||||||||| ||||| ||  |||| ||||||||||    
T  26718550 aggagtgttatttgaataaccatttggttgataatttttgggacaatcataatttac 26718494  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 26731178 - 26731122
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||||||||| ||||||||||| ||||| ||  |||| ||||||||||    
T  26731178 aggagtgttatttgaataaccatttggttgataatttttgggacaatcataatttac 26731122  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 38338811 - 38338866
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataattta 213  Q
    |||||| ||||| ||| |||||||||||||| ||||| || |||||||||||||||    
T  38338811 aggagtattattcgaacaatcatttggttgataatttttggaacaaccataattta 38338866  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 46405865 - 46405919
Alignment:
Q  160 gagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||| |||||||||||||| ||||| |   |||||||||||||||    
T  46405865 gagtgttatttgaacaatcatttggttgataattttttggacaaccataatttac 46405919  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 53654638 - 53654695
Alignment:
Q  158 aggagtgttatttgaataatca-tttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||||||||| || |||| |||| ||||||||  |||||||||||||||    
T  53654638 aggagtgttatttgaataaccaatttgattgataatttatgggacaaccataatttac 53654695  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 1815890 - 1815946
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||| |||||||||| |||||  ||| |||||||||||    
T  1815890 aggagtgttatttgaacaaccatctggttgacaacttatgtgacagccataatttac 1815946  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 12139035 - 12138979
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||| ||||||||||| || |||||| |||| || ||||| ||||||||||||||||    
T  12139035 aggaatgttatttgaacaaccatttgattgataacttatgtaacaaccataatttac 12138979  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 27408218 - 27408186
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaagtt 285  Q
    ||||||||||||| |||||||||||||||||||    
T  27408218 tgtaagtatgagaaagaaagttgtcacaaagtt 27408186  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 29531617 - 29531645
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  29531617 agtatgagagagaaagttgtcacaaagtt 29531645  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 31657828 - 31657772
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    ||||||||||||| || || ||||||||||||||||| ||  |||||||| ||||||    
T  31657828 aggagtgttatttaaacaaccatttggttgacaatttttgggacaaccatcatttac 31657772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 39344869 - 39344925
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||||||||||| || || ||| |||| ||||||||||    
T  39344869 aggagtgttatttgaacaaccatttggttgataacttttgagacaatcataatttac 39344925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 42667388 - 42667332
Alignment:
Q  158 aggagtgttatttgaataatca-tttggttgacaatttatgaaacaaccataattta 213  Q
    ||||||||||||| || ||||| |||||||||||| |||||  ||||||||||||||    
T  42667388 aggagtgttatttaaacaatcaatttggttgacaacttatgcgacaaccataattta 42667332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 47099202 - 47099146
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || ||||||||||| || || ||  |||||||||||||||    
T  47099202 aggagtgttatttgaacaaccatttggttgataacttttgggacaaccataatttac 47099146  T

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Target: scaffold0519 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 11845 - 11816
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  11845 tgtaagtatgagagagaaagttgtcacaaa 11816  T

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Target: scaffold0100 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 44839 - 44810
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaa 282  Q
    ||||||||||||||||||||||||||||||    
T  44839 tgtaagtatgagagagaaagttgtcacaaa 44810  T

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Target: scaffold0532 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 11146 - 11090
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| || | |||||||||||| |||||  |||| ||||||||||    
T  11146 aggagtgttatttgaacaaccttttggttgacaacttatgtgacaatcataatttac 11090  T

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Target: scaffold0141 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 12114 - 12058
Alignment:
Q  158 aggagtgttatttgaataatcatttggttgacaatttatgaaacaaccataatttac 214  Q
    |||||||||||||||| ||  ||||||||||||| || ||  |||||||||||||||    
T  12114 aggagtgttatttgaacaactatttggttgacaacttttgcgacaaccataatttac 12058  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 34468 - 34440
Alignment:
Q  257 agtatgagagagaaagttgtcacaaagtt 285  Q
    |||||||||||||||||||||||||||||    
T  34468 agtatgagagagaaagttgtcacaaagtt 34440  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 18068 - 18036
Alignment:
Q  253 tgtaagtatgagagagaaagttgtcacaaagtt 285  Q
    ||||||||||||||||||| |||||||||||||    
T  18068 tgtaagtatgagagagaaaattgtcacaaagtt 18036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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