View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_high_7 (Length: 352)
Name: NF1277_high_7
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_high_7 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 276063 - 276404
Alignment:
| Q |
1 |
tcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttgagatgaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
276063 |
tcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttaagatgaca |
276162 |
T |
|
| Q |
101 |
tccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276163 |
tccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaact |
276262 |
T |
|
| Q |
201 |
ggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276263 |
ggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttt |
276362 |
T |
|
| Q |
301 |
tcttgcctacatatttgtcnnnnnnngagttgatgctctctg |
342 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
276363 |
tcttgcctacatatttgtcaaaaaaagagttgatgctctctg |
276404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 26396668 - 26397009
Alignment:
| Q |
1 |
tcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttgagatgaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26396668 |
tcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttaagatgaca |
26396767 |
T |
|
| Q |
101 |
tccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaact |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396768 |
tccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaact |
26396867 |
T |
|
| Q |
201 |
ggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396868 |
ggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttt |
26396967 |
T |
|
| Q |
301 |
tcttgcctacatatttgtcnnnnnnngagttgatgctctctg |
342 |
Q |
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|
||||||||||||||||||| |||||||||||||||| |
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| T |
26396968 |
tcttgcctacatatttgtcaaaaaaagagttgatgctctctg |
26397009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 19217236 - 19217305
Alignment:
| Q |
250 |
tatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtc |
319 |
Q |
| |
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|||||||||| | |||| |||||||||| ||| || || |||||||||||||| |||||||||||||| |
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| T |
19217236 |
tatcttgcaaggaaactatatatttttcattaaactcctttaatgtagttttcttacctacatatttgtc |
19217305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 19216995 - 19217023
Alignment:
| Q |
3 |
gatgcatcccactctacaacaaattcttc |
31 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
19216995 |
gatgcatcccactctacaacaaattcttc |
19217023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 28953 - 29293
Alignment:
| Q |
1 |
tcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttgagatgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28953 |
tcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaagaggtgagctgactatcttcattccttttcttgacatgaca |
29052 |
T |
|
| Q |
101 |
tccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaact |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29053 |
tccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaact |
29152 |
T |
|
| Q |
201 |
ggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29153 |
ggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagttt |
29252 |
T |
|
| Q |
301 |
tcttgcctacatatttgtcnnnnnnngagttgatgctctct |
341 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |
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| T |
29253 |
tcttgcctacatatttgtcaaaaaaagagttgatgctctct |
29293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 319
Target Start/End: Complemental strand, 56109273 - 56109053
Alignment:
| Q |
99 |
catccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaagaa |
198 |
Q |
| |
|
|||||||||||||||| || ||||||||| || || ||||| | |||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
56109273 |
catccagataatcccaaaacttcaacttgaaatttcttgaagatttcatgtgtatatatcatcgacatttgcttctcaaaaggtgatggagtcctaagaa |
56109174 |
T |
|
| Q |
199 |
ctggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgtagt |
298 |
Q |
| |
|
| ||||| || |||||||| ||||||||||| ||| |||| || ||||| ||||| || |||||||||| ||||||||| |||||||| || |||||||| |
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|
| T |
56109173 |
caggttgcttgtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttcgacaaattcctttaatgtagt |
56109074 |
T |
|
| Q |
299 |
tttcttgcctacatatttgtc |
319 |
Q |
| |
|
|||||| | |||||||||||| |
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| T |
56109073 |
tttcttacatacatatttgtc |
56109053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 319
Target Start/End: Complemental strand, 26015041 - 26014820
Alignment:
| Q |
97 |
gacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaag |
196 |
Q |
| |
|
|||||||||||||||||| || ||||||||| || || |||| | || ||| ||||| ||| | ||||||||||||||||||||||||||||| |||| |
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|
| T |
26015041 |
gacatccagataatcccaaaacttcaacttgaaatttcttgacgattt-atgtgtatatatcctcgacatttgcttctcaaaaggtgatggagtcctaag |
26014943 |
T |
|
| Q |
197 |
aactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttcaacaaattctttcaatgta |
296 |
Q |
| |
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||| |||| || |||||||| ||||||||||| ||| |||| || ||||| ||||| || |||||||||| ||||||||| |||||||| || ||||| |
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| T |
26014942 |
aacacgttgcttgtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttcgacaaattcctttaatgtt |
26014843 |
T |
|
| Q |
297 |
gttttcttgcctacatatttgtc |
319 |
Q |
| |
|
|||||||| | |||||||||||| |
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|
| T |
26014842 |
gttttcttacatacatatttgtc |
26014820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 6967547 - 6967486
Alignment:
| Q |
258 |
aaagcaacttcatatttttcaacaaattctttcaatgtagttttcttgcctacatatttgtc |
319 |
Q |
| |
|
|||||||||| ||||||||| |||||||| || |||||||||||||| | |||||||||||| |
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|
| T |
6967547 |
aaagcaactttatatttttcgacaaattcctttaatgtagttttcttacatacatatttgtc |
6967486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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