View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_1 (Length: 901)
Name: NF1277_low_1
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 5e-86; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 424 - 625
Target Start/End: Complemental strand, 22043085 - 22042884
Alignment:
| Q |
424 |
tcaagtttataaattagtaccatgatttagtaatatttttattttgtaaacaatgtctttcatgaaaattccctatcttgccttttacatcttataaata |
523 |
Q |
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| T |
22043085 |
tcaagtttataaatttgtaccatgatttagtaatattttaaatttgtaaacaatgtctttaatgaaaattccctatcttaccttttacatcttataaaaa |
22042986 |
T |
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| Q |
524 |
ttattgcattcaaatattaactatagacataccaatataaggaaacgtatgatatattgcagtcaaactaaaactgttggaaattgaattcaattggaaa |
623 |
Q |
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| T |
22042985 |
ttattgcattcaaatattaactatagacataccaatataatgaaacgtatgatatattgcagtcaaactaaaactgttggaaatctaaatcaattggaaa |
22042886 |
T |
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| Q |
624 |
ga |
625 |
Q |
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| T |
22042885 |
ga |
22042884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 711 - 901
Target Start/End: Complemental strand, 22042876 - 22042684
Alignment:
| Q |
711 |
atgcttattcctctgtcattcctgctccaacttttattccatctcacatatgcaacttgggttttctctccatatat--ctttctatataaaccatatat |
808 |
Q |
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| T |
22042876 |
atgcttattcctctgccattcctgctccaacttttattccatctcacatatgcaacttggcttttctctccatatatatctttatatataacccatctct |
22042777 |
T |
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| Q |
809 |
tgacataattgaatgttcacaataaaaaatataactacatcatctttcacaactctttccacttcaaatggctggatatcgtgttgtacttaa |
901 |
Q |
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| T |
22042776 |
tgacattattgcatcttcacaataaaaaatataactacatcatctttaacaactctttccacttcaaatggctggatatcgtgttgtacttaa |
22042684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 22043558 - 22043423
Alignment:
| Q |
24 |
ttaaatctttcaatactctaaactccacatcacaaatcccatattttcatagtcgaaatctagatcctgctgtagcaatttactttgacgtcactctaac |
123 |
Q |
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| T |
22043558 |
ttaaatctttcaatactctaaactccacatcacaaatcccagattttcatagtcgaaatctagatcctgctgtagcaatttcctttgacgtcactctaac |
22043459 |
T |
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| Q |
124 |
tcaaaatatcatggacgaaatgtctttagttacgta |
159 |
Q |
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| T |
22043458 |
tcaaaatatcatggacgaaatgtctttagttacgta |
22043423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 22043343 - 22043259
Alignment:
| Q |
241 |
actataccagaagatttcgccaactatatcaatcaaggatttcctcatcaactaattacattgtgcggtgataacgattgtgtaa |
325 |
Q |
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| T |
22043343 |
actataccagaagattttgccaactatatcaatcaaggatttcctcatcaactaattacattgtgcggtgataacgattgtgtaa |
22043259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 329 - 407
Target Start/End: Complemental strand, 22043212 - 22043134
Alignment:
| Q |
329 |
tcaagtaaactctccattaggctggaaatctttttcaatctccaacaactttaacacaaatgacattataaggttcaga |
407 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
22043212 |
tcaactaaactctccattaggctggaaatctttttcaatctccaacaattttaacacaaatgacattatacggttcaga |
22043134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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