View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_10 (Length: 375)
Name: NF1277_low_10
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 178 - 346
Target Start/End: Complemental strand, 43409390 - 43409222
Alignment:
| Q |
178 |
cgtccatgacgacatgcaaatgcaagctcctacaagcttgttgaacaacaagggacaatgagtttagcatttgtttctgctgttcggtgtcacgacaatc |
277 |
Q |
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| T |
43409390 |
cgtccatgacgacatgcaaatgcaagctcctacaagcttgttgaacaacaagggacaatgagtttagcatttgtttctgctgttcggtgtcacgacaatc |
43409291 |
T |
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| Q |
278 |
tttaggaaggaaaaattccaaaacaaaatcagcagcagaaccagtgtagacactcctcaatggaatggc |
346 |
Q |
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| T |
43409290 |
tttaggaaggaaaaattccaaaacaaaatcagcagcagaaccagtgtagacactcctcaatggaatggc |
43409222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 43409555 - 43409423
Alignment:
| Q |
16 |
atgatgatgaagtgtctttggttgaacagcctgaaactgcatcaacttgtgatagtggttcagaagcagaagaaggcatgtaactatttgttgttgggaa |
115 |
Q |
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| T |
43409555 |
atgatgatgaagtgtctttggttgaacaacctgaaactgcatcaacttgtgatagtggttcagaagcagaagaaggcatgtaactatttgttgttgggaa |
43409456 |
T |
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| Q |
116 |
ggtgaattgatcatgatcatgatcagctgaaga |
148 |
Q |
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| T |
43409455 |
ggtgaattgatcatgatcatggtcagctgaaga |
43409423 |
T |
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