View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_11 (Length: 368)
Name: NF1277_low_11
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 37803851 - 37804077
Alignment:
| Q |
29 |
acatgtaatacataaaggcaggccaatcgaatcgtgacatccaaatccaaatacaaataacaaaagaaacaagtctgtcttcccatgagctaagtcgcat |
128 |
Q |
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| T |
37803851 |
acatgtaatacataaaggcaggccaatccaatc--------caaatccaaatacaaataacaaaagaaacaagtctgtcttcccatgagctaagtcgcat |
37803942 |
T |
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| Q |
129 |
tgtctttcccccttggccacctgttcatctatnnnnnnng-aattaaacgaggtaaaattacatcccaaaaatatatcttcatgtaataaacttctagga |
227 |
Q |
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||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37803943 |
tgtctttcccc-ttcgccacctgttcatctataaaaaaaataattaaacgaggtaaaattacatcccaaaaagatatcttcatgtaataaacttctagga |
37804041 |
T |
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| Q |
228 |
atactttagatacaacattaccaggtacatataagt |
263 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37804042 |
atactttagatacaacattaccaggtacatataagt |
37804077 |
T |
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