View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_13 (Length: 345)
Name: NF1277_low_13
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 19693523 - 19693697
Alignment:
| Q |
99 |
tgtgttactattttcggagaaaatgaagtgggtggataaagggttgaatggaaatgacgctggtgaaagctctgttcctcgacaagagaagaaggttcct |
198 |
Q |
| |
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||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |
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| T |
19693523 |
tgtgttactattttcggaggaaataaagttggtggataaagggttgaatggaaatgacactggtgaaagctctggtcctcgacaagagaagaagattcca |
19693622 |
T |
|
| Q |
199 |
gataagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttctgtg |
273 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19693623 |
gacaagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttgtgtg |
19693697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 19704108 - 19704282
Alignment:
| Q |
99 |
tgtgttactattttcggagaaaatgaagtgggtggataaagggttgaatggaaatgacgctggtgaaagctctgttcctcgacaagagaagaaggttcct |
198 |
Q |
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||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |
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| T |
19704108 |
tgtgttactattttcggaggaaataaagttggtggataaagggttgaatggaaatgacactggtgaaagctctggtcctcgacaagagaagaagattcca |
19704207 |
T |
|
| Q |
199 |
gataagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttctgtg |
273 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19704208 |
gacaagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttgtgtg |
19704282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 99 - 273
Target Start/End: Complemental strand, 20594680 - 20594506
Alignment:
| Q |
99 |
tgtgttactattttcggagaaaatgaagtgggtggataaagggttgaatggaaatgacgctggtgaaagctctgttcctcgacaagagaagaaggttcct |
198 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
20594680 |
tgtgttactatttttggagaagatgaagtgggtggataaaggcttgaatggaaaggacactggtgaaagctctggtcctcgacaagagaagaagattcct |
20594581 |
T |
|
| Q |
199 |
gataagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttctgtg |
273 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20594580 |
gacaagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttgtgtg |
20594506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 31191161 - 31191335
Alignment:
| Q |
99 |
tgtgttactattttcggagaaaatgaagtgggtggataaagggttgaatggaaatgacgctggtgaaagctctgttcctcgacaagagaagaaggttcct |
198 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||| |
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| T |
31191161 |
tgtgttactatttttggagaagatgaagtgggtggataaaggcttgaatggaaaggacactggtgaaagctctggtcctcgacaagagaagaagattccc |
31191260 |
T |
|
| Q |
199 |
gataagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttctgtg |
273 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31191261 |
gacaagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttgtgtg |
31191335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 99 - 273
Target Start/End: Complemental strand, 3345169 - 3345002
Alignment:
| Q |
99 |
tgtgttactattttcggagaaaatgaagtgggtggataaagggttgaatggaaatgacgctggtgaaagctctgttcctcgacaagagaagaaggttcct |
198 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||| ||| |||| |||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
3345169 |
tgtgttactatttttggagaagatgaagtgggtcgataaaggcttggt--gaaa----gctggtgaaagctctggtcctcgacaagagaagaagattcct |
3345076 |
T |
|
| Q |
199 |
gataagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttctgtg |
273 |
Q |
| |
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|| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |
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|
| T |
3345075 |
gagaagaatgccttaaagtaagattcgtttttgtctttacttgaatatagggttctct-ttttggttgttgtgtg |
3345002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 29923169 - 29923080
Alignment:
| Q |
102 |
gttactattttcggagaaaatgaagtgggtggataaagggttgaatggaaatgacgctggtgaaagctctgttcctcgacaagagaagaa |
191 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||| || ||||| || || | |||||| |||||| |||||||||| ||||| |
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| T |
29923169 |
gttactaatttcggagaagatgaagtgggtggataaaggagcaaacggaaaggaggccgatgaaagttctgttgctcgacaagacaagaa |
29923080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 14762137 - 14762311
Alignment:
| Q |
99 |
tgtgttactattttcggagaaaatgaagtgggtggataaagggttgaatggaaatgacgctggtgaaagctctgttcctcgacaagagaagaaggttcct |
198 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| | ||||||||||| ||| ||||||||| |||| || |||||||||||||||| ||||| |
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| T |
14762137 |
tgtgttactattttcaaagaagatgaagtgggtggataaatgcttgaatggaaaggacactggtgaaaaatctgctcgtcgacaagagaagaagtttcct |
14762236 |
T |
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| Q |
199 |
gataagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttctgtg |
273 |
Q |
| |
|
|| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |
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|
| T |
14762237 |
gacaagaatgcctcaaagtaagattcgtttttgtctttgcttgaatatagggttgtctgttttggttgttgtgtg |
14762311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 11334098 - 11334051
Alignment:
| Q |
226 |
tttttgtctttgcttgaatatagggttctcttttttggttgttctgtg |
273 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| ||||| |||| |
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|
| T |
11334098 |
tttttgtctttgcttgaatctagggttgtcttttttgtttgttgtgtg |
11334051 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 10716330 - 10716497
Alignment:
| Q |
99 |
tgtgttactattttcggagaaaatgaagtgggtggataaagggttgaatggaaatgacgctggtgaaagctctgttcctcgacaagagaagaaggttcct |
198 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||| ||| |||| ||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
10716330 |
tgtgttactatttttggagaagatgaagtgggtcgataaaggcttggt--gaaa----gctggtgaaagctctagtcctcgacaagagaagaagattcct |
10716423 |
T |
|
| Q |
199 |
gataagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttctgtg |
273 |
Q |
| |
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|| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |
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|
| T |
10716424 |
gagaagaatgccttaaagtaagattcgtttttgtctttacttgaatatagggttctc-tttttggttgttgtgtg |
10716497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 17097403 - 17097570
Alignment:
| Q |
99 |
tgtgttactattttcggagaaaatgaagtgggtggataaagggttgaatggaaatgacgctggtgaaagctctgttcctcgacaagagaagaaggttcct |
198 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||| ||| |||| ||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
17097403 |
tgtgttactatttttggagaagatgaagtgggtcgataaaggcttggt--gaaa----gctggtgaaagctctagtcctcgacaagagaagaagattcct |
17097496 |
T |
|
| Q |
199 |
gataagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggttctcttttttggttgttctgtg |
273 |
Q |
| |
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|| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |
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|
| T |
17097497 |
gagaagaatgccttaaagtaagattcgtttttgtctttacttgaatatagggttctc-tttttggttgttgtgtg |
17097570 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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