View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_15 (Length: 342)
Name: NF1277_low_15
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 45182159 - 45182003
Alignment:
| Q |
83 |
gatatagtacaaattacgcatattatgcttcctccttctcctcttcgtgagttcaaagatatttatcttgtttttgagttgatggactctgatttacatc |
182 |
Q |
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| T |
45182159 |
gatatagtacaaattacgcatattatgcttcctccttctcctcgtcgtgagttcaaagatatttatcttgtttttgagttgatggactctgatttacat- |
45182061 |
T |
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| Q |
183 |
aagtcatcaaggcaaataatgaccttactcctgatcatcacaagtttttcttgtaccaacttctt |
247 |
Q |
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| T |
45182060 |
-------caaggcaaataatgaccttactcctgatcatcacaagtttttcttgtaccaacttctt |
45182003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 246
Target Start/End: Complemental strand, 45175393 - 45175191
Alignment:
| Q |
32 |
atcctaagagaaatcaagctcctgcgcttgctccaagtccaacatcatcctgatatagtacaaattacgcatattatgcttcctccttctcctcttcgtg |
131 |
Q |
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| T |
45175393 |
atcctaagagaaatcaagctcttgcgcttgctc--ag-------gcatcctgatattgttgaaattaggcatattatgcttcctcctt---cacgccgtg |
45175306 |
T |
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| Q |
132 |
agttcaaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgaccttactcctgatcatcacaagttttt |
231 |
Q |
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| T |
45175305 |
agtttagggatatctatgttgtctttgagttgatggaatctgatctacatcaagtaattaaggcaaatcatgatcttactcctcagcaccaccaattttt |
45175206 |
T |
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| Q |
232 |
cttgtaccaacttct |
246 |
Q |
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| T |
45175205 |
cttgtatcaacttct |
45175191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 48725013 - 48725084
Alignment:
| Q |
134 |
ttcaaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgac |
205 |
Q |
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| T |
48725013 |
ttcaaagatatatatgttgtttttgaacttatggaatcagatttacatcaagtcatcaaagcaaatgatgac |
48725084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 7253216 - 7253146
Alignment:
| Q |
134 |
ttcaaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatga |
204 |
Q |
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| T |
7253216 |
ttcaaagatatatatgttgtatttgaactcatggaatctgatttacatcaggtcatcaaagcaaatgatga |
7253146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 30813281 - 30813349
Alignment:
| Q |
137 |
aaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgac |
205 |
Q |
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|||||||||||| |||| |||||| | ||||| |||||| | |||||||||||||| || ||| ||||| |
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| T |
30813281 |
aaagatatttatgttgtctttgagctcatggagtctgatctccatcaagtcatcaaagctaatgatgac |
30813349 |
T |
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