View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1277_low_16 (Length: 340)
Name: NF1277_low_16
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 29 - 331
Target Start/End: Complemental strand, 1196754 - 1196452
Alignment:
| Q |
29 |
aatatcagcatcctttgacatgtacctaaatacaaaaccgttcacattgagcttaaattttttgatagctaatctttggtcaagaaacattagcattctt |
128 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||| | || || |||||||| |||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
1196754 |
aatatcaacatcctttgacatgtacttaggtacaaaaccgtttaaatcgatcttaaattctttgataggcaaactttggtcacgaaacattagcattctt |
1196655 |
T |
|
| Q |
129 |
cttttcacataatcaccaaattctaagatctttctcttcctcacgctatcttccattggtggtggagacattcctataatttgattactatggaaataca |
228 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1196654 |
ctcttcacataattaccaaattctaagatctttctcttcctcacactatcttccattggtggtggagacattcctataatttgattactatggaaataca |
1196555 |
T |
|
| Q |
229 |
atatgggaaaggtataccatgtgactaaccaagcctttgacaaaacacttgtcctagcaccatctttctctgacaactttgacaaaatgcaacgaagaat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1196554 |
atatgggaaaggtataccatgtgactaaccaagcctttgacaaaacacttgtcctagcaccatctttctctgacaactttgacaaaatgcaatgaagaat |
1196455 |
T |
|
| Q |
329 |
tat |
331 |
Q |
| |
|
||| |
|
|
| T |
1196454 |
tat |
1196452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 31 - 331
Target Start/End: Complemental strand, 1180410 - 1180110
Alignment:
| Q |
31 |
tatcagcatcctttgacatgtacctaaatacaaaaccgttcacattgagcttaaattttttgatagctaatctttggtcaagaaacattagcattcttct |
130 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
1180410 |
tatcaacatcctttgacatgtacctaactacaaaaccattcaaattgagcctaaattttttgatagccaaactttggtcacgaaacattagcattcttct |
1180311 |
T |
|
| Q |
131 |
tttcacataatcaccaaattctaagatctttctcttcctcacgctatcttccattggtggtggagacattcctataatttgattactatggaaatacaat |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180310 |
cttcacataatcaccaaattctaagatctttctcttcctcacactatcttccattggtggtggagacattcctataatttgattactatggaaatacaat |
1180211 |
T |
|
| Q |
231 |
atgggaaaggtataccatgtgactaaccaagcctttgacaaaacacttgtcctagcaccatctttctctgacaactttgacaaaatgcaacgaagaatta |
330 |
Q |
| |
|
|| ||||| |||||||||||| ||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
1180210 |
ataggaaaagtataccatgtgtctaaccaagccttggacaaaacacttgtcctagtacgttctttctctggcaactttgacaaaatgcaatgaagaatta |
1180111 |
T |
|
| Q |
331 |
t |
331 |
Q |
| |
|
| |
|
|
| T |
1180110 |
t |
1180110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 71 - 331
Target Start/End: Complemental strand, 1185747 - 1185484
Alignment:
| Q |
71 |
cacattgagcttaaattttttgatagctaatctttggtcaagaaacattagcattcttcttttcacataatcaccaaattctaagatctttctcttcctc |
170 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||| ||| |||| |||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
1185747 |
cacattgagcttaaattctttgatagtcaagctttgatcacgaaattttagcattctccttttcacataatcacaaaattctaaggtctttctcttcctc |
1185648 |
T |
|
| Q |
171 |
acgctatcttccattgg---tggtggagacattcctataatttgattactatggaaatacaatatgggaaaggtataccatgtgactaaccaagcctttg |
267 |
Q |
| |
|
|| |||||||| ||||| || | ||| || ||||| |||| | || | ||| |||| || ||||| |||||||||||| ||||||||||||| | |
|
|
| T |
1185647 |
acactatcttctattggttttgcttgaggcaatcctaggattttactatcagaaaaagacaagataggaaaagtataccatgtgtctaaccaagccttgg |
1185548 |
T |
|
| Q |
268 |
acaaaacacttgtcctagcaccatctttctctgacaactttgacaaaatgcaacgaagaattat |
331 |
Q |
| |
|
||||||||||| | ||||||| ||||||||| |||| |||||||||||| | ||||||||| |
|
|
| T |
1185547 |
acaaaacactttttctagcacggtctttctcttgcaaccttgacaaaatgcgattaagaattat |
1185484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 1180055 - 1179996
Alignment:
| Q |
272 |
aacacttgtcctagcaccatctttctctgacaactttgacaaaatgcaacgaagaattat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
1180055 |
aacacttgtcctagcaccatctttctctgacaaatttgacaaaatgtgatgaagaattat |
1179996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 16472011 - 16471920
Alignment:
| Q |
226 |
acaatatgggaaaggtataccatgtgactaaccaagcctttgacaaaacacttgtcctagcaccatctttctctgacaactttgacaaaatg |
317 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||||||| || ||| ||||||||| |||||| ||||||| |||| || | |||||| |||| |
|
|
| T |
16472011 |
acaatataggaaaagtataccatgtgtctaaccaagctttggactaaacacttgccctagcggcatctttatctggcagccttgacagaatg |
16471920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 8553518 - 8553607
Alignment:
| Q |
228 |
aatatgggaaaggtataccatgtgactaaccaagcctttgacaaaacacttgtcctagcaccatctttctctgacaactttgacaaaatg |
317 |
Q |
| |
|
||||| ||||| ||| ||||||| || |||||| || ||||||||||||||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
8553518 |
aatataggaaaagtaaaccatgtatctgcccaagctttcgacaaaacacttgtcctagcagcatctttctctggcaaccttgacaaaatg |
8553607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 8305592 - 8305532
Alignment:
| Q |
257 |
ccaagcctttgacaaaacacttgtcctagcaccatctttctctgacaactttgacaaaatg |
317 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
8305592 |
ccaagctttggacaaaacacttgtcctagcagcatctttctctggcaaccttgacaaaatg |
8305532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 5203304 - 5203229
Alignment:
| Q |
222 |
aaatacaatatgggaaaggtataccatgtgactaaccaagcctttgacaaaacacttgtcctagcaccatctttct |
297 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || |||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
5203304 |
aaatacaaaataggaaaagtataccatgtctcttcccaagctttggacaaaacacttgtcctagcaccatctttct |
5203229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 5174164 - 5174098
Alignment:
| Q |
234 |
ggaaaggtataccatgtgactaaccaagcctttgacaaaacacttgtcctagcaccatctttctctg |
300 |
Q |
| |
|
||||| |||||||||||| ||||||||| || |||||||||||||||||||| |||||||||||| |
|
|
| T |
5174164 |
ggaaaagtataccatgtgtctaaccaagatttggacaaaacacttgtcctagccgcatctttctctg |
5174098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 6229759 - 6229685
Alignment:
| Q |
226 |
acaatatgggaaaggtataccatgtgactaaccaagcctttgacaaaacacttgtcctagcaccatctttctctg |
300 |
Q |
| |
|
||||||| ||||| |||| |||||| ||||||||| || ||||||||||||||||||||| ||||||| |||| |
|
|
| T |
6229759 |
acaatataggaaaagtatgccatgtctctaaccaagatttggacaaaacacttgtcctagcagcatctttttctg |
6229685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 5193029 - 5192961
Alignment:
| Q |
226 |
acaatatgggaaaggtataccatgtgactaaccaagcctttgacaaaacacttgtcctagcaccatctt |
294 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||| | || ||||||||||||||| ||||| |||||| |
|
|
| T |
5193029 |
acaatataggaaaagtataccatgtttctaaccaatctttagacaaaacacttgtcttagcagcatctt |
5192961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University