View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_24 (Length: 280)
Name: NF1277_low_24
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_24 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 28102188 - 28101937
Alignment:
| Q |
29 |
aggatggtgtccttgttcctcataaaagcattgcgaatcctggtgatttaggggaaactgagaggtcgtcattcctcagtgttgcctctgcatctatctt |
128 |
Q |
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| T |
28102188 |
aggatggtgtccttgttcctcataaaagcattgcgaatcctggtgatttaggggaaactgagaggtcgtcattcctcagtgttgcctctgcatctatctt |
28102089 |
T |
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| Q |
129 |
tcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatactactatgtatgctgatttgagtactgataagataccttttaccacaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102088 |
tcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatactactatgtatgctgatttgagtactgataagataccttttaccacaa |
28101989 |
T |
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| Q |
229 |
cacacaactctaagacaccaacagctgcagcagttaagagtgttcaaatttt |
280 |
Q |
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| T |
28101988 |
cacacaactctaagacaccaacagctgcagcagttaagagtgttcaaatttt |
28101937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 280
Target Start/End: Original strand, 36905815 - 36906067
Alignment:
| Q |
29 |
aggatggtgtccttgttcctcataaaagcattgcgaatcctggtgatttaggggaaactgagaggtcgtcattcctcagtgttgcctctgcatctatct- |
127 |
Q |
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| T |
36905815 |
aggatggtgtccctgttcctcataaaatcactgcgacgcctggtgatttaggggaaactgagaggtcgtcattccttagtgttgcctttgcatacatctc |
36905914 |
T |
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| Q |
128 |
ttcagcttgtgatccttgtgaactgagaccacgcctaatgcatgttccatatactactatgtatgctgatttgagtactgataagataccttttaccaca |
227 |
Q |
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| T |
36905915 |
ttcagcttgtgatccttgtttactgagaccacacctaatgcttgttccatatactactatgtatgctgaattgagtactgataagagaccttttaccaca |
36906014 |
T |
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| Q |
228 |
acacacaactctaagacaccaacagctgcagcagttaagagtgttcaaatttt |
280 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
36906015 |
acatacaactctaagacaccaacagctgcagcacttaagagtgtccaaatttt |
36906067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 36 - 243
Target Start/End: Complemental strand, 3248853 - 3248645
Alignment:
| Q |
36 |
tgtccttgttcctcataaaagcattgcgaatcctggtgatttaggggaaactgagaggtcgtcattcctcagtgttgcctctgcatctatct-ttcagct |
134 |
Q |
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||||| ||||||||||||||||| |||||| |||| |||||||||||||||| ||| | | ||||||||||||||||||||||||| |||| ||||||| |
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| T |
3248853 |
tgtccatgttcctcataaaagcactgcgaagcctgttgatttaggggaaactaagaagctgacattcctcagtgttgcctctgcatccatctcttcagct |
3248754 |
T |
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| Q |
135 |
tgtgatccttgtgaactgagaccacgcctaatgcatgttccatatactactatgtatgctgatttgagtactgataagataccttttaccacaacacaca |
234 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| |
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| T |
3248753 |
tgcgatccttgtgaactgagaccacgcctaatgcctgttccatatactactatgtatgctgagttgagtactgacaagagaccttttaccacaacacaca |
3248654 |
T |
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| Q |
235 |
actctaaga |
243 |
Q |
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|||| |||| |
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| T |
3248653 |
actcaaaga |
3248645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 74317 - 74222
Alignment:
| Q |
145 |
gtgaactgagaccacgcctaatgcatgttccatatactactatgtatgctgatttgagtactgataagataccttttaccacaacacacaactcta |
240 |
Q |
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| T |
74317 |
gtgaactgagaccaagcagaatgcatcttccatatactactatgtatggtgagttcagtactgataagatgccttttaccacaacacacaactcta |
74222 |
T |
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