View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1277_low_25 (Length: 275)
Name: NF1277_low_25
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_25 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 36605089 - 36605350
Alignment:
| Q |
13 |
aatattctgagaataagagcgaaatgaaaatttgcagaggcgagataataaagcgtgaatttacggtacctggtagagactcttttgaggttgatcttca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36605089 |
aatattctgagaataagagcgaaatgaaaatttgcagaggcgagataataaagcgtgaatttacggtacctggtagagactcttttgaggttgatcttca |
36605188 |
T |
|
| Q |
113 |
atttcttcatcatcggaaaccctagatttcttattcggcgccatttttcacacagagagatttgtttgatggatttgatagtgcgttattgtgtttgttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36605189 |
atttcttcatcatcggaaaccctagatttcttattcggcgccatttttcacacagagagatttgtttgatggatttgatagtgcgttattgtgtttg-tt |
36605287 |
T |
|
| Q |
213 |
ttaaactcaattaatcgatttttaaacaaaaagtttgtggttgttcccgctataatttacgat |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36605288 |
ttaaactcaattaatcgatttttaaacaaaaagtttgtggttgttcccgctataatttacgat |
36605350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University