View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_30 (Length: 251)
Name: NF1277_low_30
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28101819 - 28101581
Alignment:
| Q |
1 |
cgtggcaagaagaataaaaaacagaaaagccccaagtctgtggctgaagcaagttctgctagaataaatactagatccaagaaaaatctcaatatcaaca |
100 |
Q |
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| T |
28101819 |
cgtggcaagaagaataaaaaacagaaaagccccaagtctgtggctgaagcaagttctgctagaataaatactagatccaagaaaaatctcaatatcaaca |
28101720 |
T |
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| Q |
101 |
catcctaatgatacagtttgcgtggaacctcgtaagcattggaaaacatgactttatgtttctaggcatagtcatttaacacatatggagtgcttggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28101719 |
catcctaatgatacagtttgcgtggaacctcgtaagcattggaaaacatgactttatgtttctaggcatagtcatttaacacatatggagtgcttggtta |
28101620 |
T |
|
| Q |
201 |
gcccacataaatgtttgagtttttaggagctttcatctg |
239 |
Q |
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| T |
28101619 |
gcccacataaatgtttgagtttttaggagctttcatctg |
28101581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 36906187 - 36906424
Alignment:
| Q |
2 |
gtggcaagaagaataaaaaacagaaaagccccaagtctgtggctgaagcaagttctgctagaataaatactagatccaagaaaaatctcaatatcaacac |
101 |
Q |
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| T |
36906187 |
gtggcaagaagaattaaaaacagaagagccccaagtctatggctgaagcaagttctgctagaataaatacaagatccaagaaaaatctcaatatcaccac |
36906286 |
T |
|
| Q |
102 |
atcctaatgatacagtttgcgtggaacctcgtaagcattggaaaacatgactttatgtttctaggcatagtcatttaacacatatggagtgcttggttag |
201 |
Q |
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| T |
36906287 |
atcctaatgaaaccgtttgtgtggaacctcatagacattggaaaacatgactttatgtttctaggcagagtcatttaacacaaatggagggcttggttag |
36906386 |
T |
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| Q |
202 |
cccacataaatgtttgagtttttaggagctttcatctg |
239 |
Q |
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| T |
36906387 |
cccacataaatgtttgagtctttaggagctttcttctg |
36906424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 3248533 - 3248332
Alignment:
| Q |
39 |
tgtggctgaagcaagttctgctagaataaatactagatccaagaaaaatctcaatatcaacacatcctaatgatacagtttgcgtggaacctcgtaagca |
138 |
Q |
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| T |
3248533 |
tgtggctgaagcaagttctgctagaaaaaatacaagatccaagaaaaattccaatatcaacacatcctaatgaaactgtttgtgtggaatctcatatgca |
3248434 |
T |
|
| Q |
139 |
ttggaaaacatgactttatgtttctag-gcatagtcatttaacacatatggagtgcttggttagcccacataaatgtttgagtttttaggagctttcatc |
237 |
Q |
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| T |
3248433 |
ttggaaaacaggactttatgtttctagagcagagtcatttaacataaatagaggacttggttagcactcataaatgtctgagtttttaggagctttcatc |
3248334 |
T |
|
| Q |
238 |
tg |
239 |
Q |
| |
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|| |
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| T |
3248333 |
tg |
3248332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35554303 - 35554067
Alignment:
| Q |
1 |
cgtggcaagaagaataaaaaacagaaaagccccaagtctgtggctgaagcaagttctgctagaataaatactagatccaagaaaaatctcaatatcaaca |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35554303 |
cgtggcaagaagaataaaaaacagaaaagccccaagtctatggctgaagcaagttctgctagaataaatacaagatccaagaaaaatctcaatatca--c |
35554206 |
T |
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| Q |
101 |
catcctaatgatacagtttgcgt-ggaacctcgtaagcattggaaaacatgactttatgtttctaggcatagtcatttaacacatatggagtgcttggtt |
199 |
Q |
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| T |
35554205 |
catcctaatgaaaccgtttgtgtgggaccctcataggcaatggaaaacatggc-ttatgtttctaggcagagtcatttaacacaaatggagggcttggtt |
35554107 |
T |
|
| Q |
200 |
agcccacataaatgtttgagtttttaggagctttcatctg |
239 |
Q |
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| T |
35554106 |
agcccacataaatgtttgagtctttagaagctttcatctg |
35554067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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