View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1277_low_31 (Length: 227)

Name: NF1277_low_31
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1277_low_31
NF1277_low_31
[»] chr3 (2 HSPs)
chr3 (1-227)||(14762072-14762298)
chr3 (50-214)||(11334142-11334306)
[»] chr1 (1 HSPs)
chr1 (1-219)||(20594527-20594742)
[»] chr8 (3 HSPs)
chr8 (1-219)||(31191099-31191314)
chr8 (14-219)||(3345022-3345221)
chr8 (57-105)||(29923133-29923181)
[»] chr4 (2 HSPs)
chr4 (47-219)||(19693504-19693676)
chr4 (47-219)||(19704089-19704261)
[»] chr7 (1 HSPs)
chr7 (4-219)||(10716268-10716477)
[»] chr2 (1 HSPs)
chr2 (4-219)||(17097341-17097550)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14762072 - 14762298
Alignment:
Q  1 cgattgtttgagttcctaatttcggttaagtttgtgttactatttagagttccggatctagggtttgtgttactattttcaaagaagatgaagtgggtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14762072 cgattgtttgagttcctaatttcggttaagtttgtgttactatttagagttccggatctagggtttgtgttactattttcaaagaagatgaagtgggtgg 14762171  T
Q  101 ataaatgcttgaatggaaaggacactggtgaaaaatctgctcgtcaacaagagaagaagtttcctgacaagaatgcctcaaagtaagattcgtttttgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14762172 ataaatgcttgaatggaaaggacactggtgaaaaatctgctcgtcgacaagagaagaagtttcctgacaagaatgcctcaaagtaagattcgtttttgtc 14762271  T
Q  201 tttgcttgaatatagggttgtctgttt 227  Q
    |||||||||||||||||||||||||||    
T  14762272 tttgcttgaatatagggttgtctgttt 14762298  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 11334306 - 11334142
Alignment:
Q  50 ttccggatctagggtttgtgttactattttcaaagaagatgaagtgggtggataaatgcttgaatggaaaggacactggtgaaaaatctgctcgtcaaca 149  Q
    ||||| ||||||||||| |||||||||| ||| |||| ||||||||||||||  || |||||||| ||||||| |  | ||||| |||| ||  || |||    
T  11334306 ttccgaatctagggtttttgttactattgtcagagaaaatgaagtgggtggaagaaggcttgaatcgaaaggatatcgatgaaagatctactgctcgaca 11334207  T
Q  150 agagaagaagtttcctgacaagaatgcctcaaagtaagattcgtttttgtctttgcttgaatata 214  Q
    ||| ||| || ||||| ||| ||||||||||||||||||||| |||||||||||| ||| |||||    
T  11334206 agataaggagattcctaacatgaatgcctcaaagtaagattcttttttgtctttgtttgtatata 11334142  T

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Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 20594742 - 20594527
Alignment:
Q  1 cgattgtttgagttcctaatttcggttaagtttgtgttac-tatttagagttccggatctagggtttgtgttactattttcaaagaagatgaagtgggtg 99  Q
    ||||||||||||||||||||||||||||    |  | ||| || || |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  20594742 cgattgtttgagttcctaatttcggtta----tcaggtacgtaattcgagttccggatctagggtttgtgttactatttttggagaagatgaagtgggtg 20594647  T
Q  100 gataaatgcttgaatggaaaggacactggtgaaaaatctgctcgtcaacaagagaagaagtttcctgacaagaatgcctcaaagtaagattcgtttttgt 199  Q
    |||||| |||||||||||||||||||||||||||  |||| || || ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  20594646 gataaaggcttgaatggaaaggacactggtgaaagctctggtcctcgacaagagaagaagattcctgacaagaataccttaaagtaagattcgtttttgt 20594547  T
Q  200 ctttgcttgaatatagggtt 219  Q
    ||||||||||||||||||||    
T  20594546 ctttgcttgaatatagggtt 20594527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 31191099 - 31191314
Alignment:
Q  1 cgattgtttgagttcctaatttcggttaagtttgtgttac-tatttagagttccggatctagggtttgtgttactattttcaaagaagatgaagtgggtg 99  Q
    ||||||||||||||||||||||||||||    |  | ||| || || |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  31191099 cgattgtttgagttcctaatttcggtta----tcaggtacgtaattcgagttccggatctagggtttgtgttactatttttggagaagatgaagtgggtg 31191194  T
Q  100 gataaatgcttgaatggaaaggacactggtgaaaaatctgctcgtcaacaagagaagaagtttcctgacaagaatgcctcaaagtaagattcgtttttgt 199  Q
    |||||| |||||||||||||||||||||||||||  |||| || || ||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||    
T  31191195 gataaaggcttgaatggaaaggacactggtgaaagctctggtcctcgacaagagaagaagattcccgacaagaataccttaaagtaagattcgtttttgt 31191294  T
Q  200 ctttgcttgaatatagggtt 219  Q
    ||||||||||||||||||||    
T  31191295 ctttgcttgaatatagggtt 31191314  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 3345221 - 3345022
Alignment:
Q  14 tcctaatttcggttaagtttgtgttactatttagagttccggatctagggtttgtgttactattttcaaagaagatgaagtgggtggataaatgcttgaa 113  Q
    |||||||||||||||||||||||| |  | || ||||||| | |||||||||||||||||||||||   |||||||||||||||| |||||| |||||      
T  3345221 tcctaatttcggttaagtttgtgtaagcaattcgagttccagttctagggtttgtgttactatttttggagaagatgaagtgggtcgataaaggcttggt 3345122  T
Q  114 tggaaaggacactggtgaaaaatctgctcgtcaacaagagaagaagtttcctgacaagaatgcctcaaagtaagattcgtttttgtctttgcttgaatat 213  Q
      |||||    |||||||||  |||| || || ||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  3345121 --gaaag----ctggtgaaagctctggtcctcgacaagagaagaagattcctgagaagaatgccttaaagtaagattcgtttttgtctttacttgaatat 3345028  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 29923181 - 29923133
Alignment:
Q  57 tctagggtttgtgttactattttcaaagaagatgaagtgggtggataaa 105  Q
    ||||||||||  ||||||| ||||  |||||||||||||||||||||||    
T  29923181 tctagggtttccgttactaatttcggagaagatgaagtgggtggataaa 29923133  T

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Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 19693504 - 19693676
Alignment:
Q  47 gagttccggatctagggtttgtgttactattttcaaagaagatgaagtgggtggataaatgcttgaatggaaaggacactggtgaaaaatctgctcgtca 146  Q
    |||||||| |||||||||||||||||||||||||  || | || |||| |||||||||| | ||||||||||| |||||||||||||  |||| || ||     
T  19693504 gagttccgaatctagggtttgtgttactattttcggaggaaataaagttggtggataaagggttgaatggaaatgacactggtgaaagctctggtcctcg 19693603  T
Q  147 acaagagaagaagtttcctgacaagaatgcctcaaagtaagattcgtttttgtctttgcttgaatatagggtt 219  Q
    ||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  19693604 acaagagaagaagattccagacaagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggtt 19693676  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 19704089 - 19704261
Alignment:
Q  47 gagttccggatctagggtttgtgttactattttcaaagaagatgaagtgggtggataaatgcttgaatggaaaggacactggtgaaaaatctgctcgtca 146  Q
    |||||||| |||||||||||||||||||||||||  || | || |||| |||||||||| | ||||||||||| |||||||||||||  |||| || ||     
T  19704089 gagttccgaatctagggtttgtgttactattttcggaggaaataaagttggtggataaagggttgaatggaaatgacactggtgaaagctctggtcctcg 19704188  T
Q  147 acaagagaagaagtttcctgacaagaatgcctcaaagtaagattcgtttttgtctttgcttgaatatagggtt 219  Q
    ||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  19704189 acaagagaagaagattccagacaagaataccttaaagtaagattcgtttttgtctttgcttgaatatagggtt 19704261  T

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Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 10716268 - 10716477
Alignment:
Q  4 ttgtttgagttcctaatttcggttaagtttgtgttactatttagagttccggatctagggtttgtgttactattttcaaagaagatgaagtgggtggata 103  Q
    |||||||||||| ||||||||||||||||| ||| |  | || ||||||||| |||||||||||||||||||||||   |||||||||||||||| ||||    
T  10716268 ttgtttgagttcgtaatttcggttaagtttctgtaagcaattcgagttccggttctagggtttgtgttactatttttggagaagatgaagtgggtcgata 10716367  T
Q  104 aatgcttgaatggaaaggacactggtgaaaaatctgctcgtcaacaagagaagaagtttcctgacaagaatgcctcaaagtaagattcgtttttgtcttt 203  Q
    || |||||    |||||    |||||||||  |||  || || ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||    
T  10716368 aaggcttggt--gaaag----ctggtgaaagctctagtcctcgacaagagaagaagattcctgagaagaatgccttaaagtaagattcgtttttgtcttt 10716461  T
Q  204 gcttgaatatagggtt 219  Q
     |||||||||||||||    
T  10716462 acttgaatatagggtt 10716477  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 17097341 - 17097550
Alignment:
Q  4 ttgtttgagttcctaatttcggttaagtttgtgttactatttagagttccggatctagggtttgtgttactattttcaaagaagatgaagtgggtggata 103  Q
    |||||||||||| ||||||||||||||||| ||| |  | || ||||||||| |||||||||||||||||||||||   |||||||||||||||| ||||    
T  17097341 ttgtttgagttcgtaatttcggttaagtttctgtaagcaattcgagttccggttctagggtttgtgttactatttttggagaagatgaagtgggtcgata 17097440  T
Q  104 aatgcttgaatggaaaggacactggtgaaaaatctgctcgtcaacaagagaagaagtttcctgacaagaatgcctcaaagtaagattcgtttttgtcttt 203  Q
    || |||||    |||||    |||||||||  |||  || || ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||    
T  17097441 aaggcttggt--gaaag----ctggtgaaagctctagtcctcgacaagagaagaagattcctgagaagaatgccttaaagtaagattcgtttttgtcttt 17097534  T
Q  204 gcttgaatatagggtt 219  Q
     |||||||||||||||    
T  17097535 acttgaatatagggtt 17097550  T

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