View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1277_low_5 (Length: 577)
Name: NF1277_low_5
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 30 - 352
Target Start/End: Original strand, 1294402 - 1294720
Alignment:
| Q |
30 |
gtgccgatttcaaattattgaaactgaaatccaaccgaagagatgtggattgattaaattgaaaaccaagactatatatcgaccaagttaattacctaac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1294402 |
gtgccgatttcaaattattgaaactgaaatccaaccgaagagatgtggattgattaaaatgaaaaccaagactatatatcgaccaagtta----cctaac |
1294497 |
T |
|
| Q |
130 |
acaatccattgtttgtgcctttgtggtttaagttggttgaatcgagagggttgaaggattgactgaaacgatgtacacccttaaattagacaatccgaag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1294498 |
acaatccattgtttgtgcctttgtggtttaagttggttgaatcgagagggttgaaggattgatcgaaacgatgtacacccttaaatgagacaatccgaag |
1294597 |
T |
|
| Q |
230 |
atggtcatttcattttatgcatttcattgttaatttcctttt-tnnnnnnnntaaaaggggttaaagtgagataattcatgtggcccattaatttgagcc |
328 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1294598 |
atgatcatttcattttatgcatttcattgttaatttccttttaaaaaaaaattaaaaggggttaaagtgagataattcatgt-gcccattaatttgagcc |
1294696 |
T |
|
| Q |
329 |
cattcgcataagtgtccaatgaca |
352 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1294697 |
cattcgcataagtgtccaatgaca |
1294720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 424 - 511
Target Start/End: Original strand, 1294793 - 1294880
Alignment:
| Q |
424 |
cattcttatgcaacagtgttatgtccttgaaatgtttgcaacaagcagcttgcttgttcctctcattctttatagtgctatattcttc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1294793 |
cattcttatgcaacagtgttatgtccttgaaatgtttgcaacaagcagcttgcttgttcctctcattctttatagtgctatattcttc |
1294880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 11206334 - 11206538
Alignment:
| Q |
41 |
aaattattgaaactgaaatccaaccgaagagatgtggattgattaaattgaaaaccaagactatatatcgaccaagttaattacctaacacaatccattg |
140 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11206334 |
aaattattgaaactgaaatctaaccgaagagatgtggattgattaaaatgaaaaccaagactatatatcgaccaagtta----cctaacacaatccatt- |
11206428 |
T |
|
| Q |
141 |
tttgtgcctttgtggtttaagttggttgaatcgagagggttgaaggattgactgaaacgatgtacacccttaaattagacaatccgaagatggtcatttc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
11206429 |
-ttgtgcctttgtggtttaagttggttgaatcgagaaggttgaaggattgactgaaacgacgtacacccttaaatgaggcaatccgaagatgatcatttc |
11206527 |
T |
|
| Q |
241 |
attttatgcat |
251 |
Q |
| |
|
||||||||||| |
|
|
| T |
11206528 |
attttatgcat |
11206538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 424 - 511
Target Start/End: Original strand, 11207284 - 11207373
Alignment:
| Q |
424 |
cattcttatgcaacagtgttatgtccttgaaatgtttgcaacaagcagcttgcttgttcctctcat--tctttatagtgctatattcttc |
511 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11207284 |
cattcttatgcaagagtgttatgtccttgaaatgtttgcaacaaacagcttgcttgttcctctcattgtctttatagtgctatattcttc |
11207373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 11207146 - 11207212
Alignment:
| Q |
286 |
ggggttaaagtgagataattcatgtggcccattaatttgagcccattcgcataagtgtccaatgaca |
352 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11207146 |
ggggttaaagtgagataatttatgtggtccattaatttgaacccattcgcataagtgtccaatgaca |
11207212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University